TreatCFM000680's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| epoxysqualene biosynthesis | 0.001447391 | plantCyc |
| farnesyl-diphosphate farnesyltransferase activity | 0.004308477 | GO:0004310 |
| squalene synthase activity | 0.004308477 | GO:0051996 |
| lipid biosynthetic process | 0.010339427 | GO:0008610 |
| Transcription_related, Transcription factor: ARR-B | 0.012061596 | TF family |
| regulation of transcription, DNA-templated | 0.018797357 | GO:0006355 |
| phosphorelay signal transduction system | 0.020623931 | GO:0000160 |
| Steroid biosynthesis | 0.022273845 | KEGG pathway |
| Transcription_related, Transcription factor: TCP | 0.024078322 | TF family |
| Transcription_related, Transcription factor: C2H2 | 0.033389379 | TF family |
| Transcription_related, Transcription factor: FAR1 | 0.033389379 | TF family |
| Plant hormone signal transduction | 0.049861401 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001149 | AT1G13300 (4.00E-10) | HRS1|HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 |
| CRO_T004391 | AT5G24610 (1.00E-58) | unknown protein |
| CRO_T008602 | AT3G63095 (3.00E-11) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T019184 | AT5G23280 (6.00E-31) | TCP family transcription factor |
| CRO_T025706 | AT4G34640 (4.00E-116) | SQS1|squalene synthase 1 |
| CRO_T028782 | AT2G43280 (7.00E-54) | Far-red impaired responsive (FAR1) family protein |
| CRO_T033392 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000095 | defense response, incompatible interaction activation of MAPK activity Protein_kinases_phosphatases, PPC:4.1.4: MAP2K lipid transport MAP kinase kinase activity lipid transporter activity Base excision repair Lysosome MAPK cascade MAP kinase activity | details |
| TreatCFM000716 | CURI complex UTP-C complex Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) Transcription_related, Transcription factor: ARR-B transcription factor activity, sequence-specific DNA binding cyclin-dependent protein serine/threonine kinase activity transcription, DNA-templated positive regulation of anthocyanin metabolic process gibberellic acid mediated signaling pathway regulation of photomorphogenesis positive regulation of circadian rhythm regulation of cell cycle red, far-red light phototransduction Transcription_related, Transcription factor: bZIP response to UV-B ribosomal small subunit assembly regulation of transcription, DNA-templated Circadian rhythm - plant double-stranded DNA binding phosphorelay signal transduction system rRNA processing nucleus response to abscisic acid Ribosome biogenesis in eukaryotes | details |
| TreatCFM001361 | epoxysqualene biosynthesis pyruvate decarboxylation to acetyl CoA transketolase activity squalene synthase activity farnesyl-diphosphate farnesyltransferase activity pyruvate dehydrogenase (acetyl-transferring) activity lipid biosynthetic process pollen tube development Transcription_related, Transcription factor: M-type glycolytic process Cell cycle - yeast Steroid biosynthesis | details |
| TreatCFM001961 | exon-exon junction complex adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc RNA splicing protein processing oxidized purine nucleobase lesion DNA N-glycosylase activity glucan endo-1,3-beta-D-glucosidase activity cytosolic small ribosomal subunit damaged DNA binding | details |
Expression profiles
 Show details about module gene expression profiling |