TreatCFM000716's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| CURI complex | 0.001706459 | GO:0032545 |
| UTP-C complex | 0.001706459 | GO:0034456 |
| Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) | 0.003412919 | kinase family |
| Transcription_related, Transcription factor: ARR-B | 0.003980327 | TF family |
| transcription factor activity, sequence-specific DNA binding | 0.010638328 | GO:0003700 |
| cyclin-dependent protein serine/threonine kinase activity | 0.010638328 | GO:0004693 |
| transcription, DNA-templated | 0.014785932 | GO:0006351 |
| positive regulation of anthocyanin metabolic process | 0.014785932 | GO:0031539 |
| gibberellic acid mediated signaling pathway | 0.014785932 | GO:0009740 |
| regulation of photomorphogenesis | 0.014785932 | GO:0010099 |
| positive regulation of circadian rhythm | 0.014785932 | GO:0042753 |
| regulation of cell cycle | 0.014785932 | GO:0051726 |
| red, far-red light phototransduction | 0.014785932 | GO:0009585 |
| Transcription_related, Transcription factor: bZIP | 0.015118855 | TF family |
| response to UV-B | 0.016461773 | GO:0010224 |
| ribosomal small subunit assembly | 0.019849846 | GO:0000028 |
| regulation of transcription, DNA-templated | 0.020536581 | GO:0006355 |
| Circadian rhythm - plant | 0.026119355 | KEGG pathway |
| double-stranded DNA binding | 0.030333307 | GO:0003690 |
| phosphorelay signal transduction system | 0.030725671 | GO:0000160 |
| rRNA processing | 0.032062819 | GO:0006364 |
| nucleus | 0.034238574 | GO:0005634 |
| response to abscisic acid | 0.047537622 | GO:0009737 |
| Ribosome biogenesis in eukaryotes | 0.047999559 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001149 | AT1G13300 (4.00E-10) | HRS1|HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 |
| CRO_T008602 | AT3G63095 (3.00E-11) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T010007 | AT2G24765 (3.00E-36) | ARF3|ADP-ribosylation factor 3; ARL1|ARF-LIKE 1 |
| CRO_T020523 | AT4G13020 (1.00E-158) | MHK|Protein kinase superfamily protein |
| CRO_T025915 | AT4G24050 (3.00E-24) | NAD(P)-binding Rossmann-fold superfamily protein |
| CRO_T027851 | AT5G38720 (4.00E-46) | unknown protein |
| CRO_T031913 | AT3G17609 (3.00E-14) | HYH|HY5-homolog |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000046 | details | |
| TreatCFM000050 | details | |
| TreatCFM000095 | defense response, incompatible interaction activation of MAPK activity Protein_kinases_phosphatases, PPC:4.1.4: MAP2K lipid transport MAP kinase kinase activity lipid transporter activity Base excision repair Lysosome MAPK cascade MAP kinase activity | details |
| TreatCFM000098 | Cytochrome_P450, Cytochrome P450: CYP78A Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) | details |
| TreatCFM000150 | peptidase activity | details |
| TreatCFM000179 | Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) cyclin-dependent protein serine/threonine kinase activity regulation of cell cycle | details |
| TreatCFM000488 | Ribosome biogenesis in eukaryotes CURI complex UTP-C complex maturation of SSU-rRNA ribosomal small subunit assembly rRNA processing Transcription_related, Transcription factor: HSF Transcription_related, Transcription factor: TCP transferase activity, transferring acyl groups small-subunit processome | details |
| TreatCFM000526 | Cytochrome_P450, Cytochrome P450: CYP78A | details |
| TreatCFM000680 | epoxysqualene biosynthesis farnesyl-diphosphate farnesyltransferase activity squalene synthase activity lipid biosynthetic process Transcription_related, Transcription factor: ARR-B regulation of transcription, DNA-templated phosphorelay signal transduction system Steroid biosynthesis Transcription_related, Transcription factor: TCP Transcription_related, Transcription factor: C2H2 Transcription_related, Transcription factor: FAR1 Plant hormone signal transduction | details |
| TreatCFM000731 | PI3K-Akt signaling pathway Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM001482 | Transcription_related, Transcription factor: Alfin-like mevalonate pathway I pyridoxal 5'-phosphate salvage I FAD diphosphatase activity pyridoxal kinase activity mevalonate kinase activity flavin-containing compound metabolic process peptidyl-cysteine oxidation anaerobic respiration pyridoxal 5'-phosphate salvage detection of hypoxia Taurine and hypotaurine metabolism Vitamin B6 metabolism phosphorylation zinc ion binding isoprenoid biosynthetic process | details |
| TreatCFM001592 | S-methyl-5'-thioadenosine degradation I S-methyl-5'-thioadenosine degradation II blue light photoreceptor activity mevalonate kinase activity blue light signaling pathway entrainment of circadian clock shade avoidance positive regulation of abscisic acid-activated signaling pathway regulation of stomatal closure anthocyanin-containing compound metabolic process programmed cell death phosphatidic acid metabolic process choline biosynthesis III mevalonate pathway I photoperiodism, flowering phospholipase D activity regulation of stomatal movement nucleoside metabolic process nuclear body Transcription_related, Transcription factor: G2-like phosphatidate metabolism, as a signaling molecule positive regulation of proteasomal ubiquitin-dependent protein catabolic process photomorphogenesis response to cold isoprenoid biosynthetic process phospholipases Circadian rhythm - plant Cysteine and methionine metabolism Glycerophospholipid metabolism Terpenoid backbone biosynthesis response to water deprivation Ubiquitin mediated proteolysis identical protein binding | details |
| TreatCFM001837 | mevalonate pathway I mevalonate kinase activity regulation of sequestering of zinc ion cation transport response to zinc ion Terpenoid backbone biosynthesis isoprenoid biosynthetic process zinc ion transmembrane transporter activity | details |
Expression profiles
 Show details about module gene expression profiling |