TreatCFM000684's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| detection of light stimulus | 0.004048762 | GO:0009583 |
| signaling receptor activity | 0.004432624 | GO:0038023 |
| cellular protein modification process | 0.009105005 | GO:0006464 |
| Fatty acid metabolism | 0.010593591 | KEGG pathway |
| 3-phosphoinositide biosynthesis | 0.028636657 | plantCyc |
| cutin biosynthesis | 0.028636657 | plantCyc |
| D-myo-inositol (1,4,5)-trisphosphate biosynthesis | 0.028636657 | plantCyc |
| long-chain fatty acid activation | 0.028636657 | plantCyc |
| oleate biosynthesis I (plants) | 0.028636657 | plantCyc |
| sporopollenin precursors biosynthesis | 0.028636657 | plantCyc |
| stearate biosynthesis II (bacteria and plants) | 0.028636657 | plantCyc |
| superpathway of phospholipid biosynthesis II (plants) | 0.028636657 | plantCyc |
| phosphatidylcholine acyl editing | 0.030008095 | plantCyc |
| palmitate biosynthesis II (bacteria and plants) | 0.030398515 | plantCyc |
| suberin monomers biosynthesis | 0.030398515 | plantCyc |
| unfolded protein binding | 0.04047658 | GO:0051082 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000027 | AT2G18790 (2.00E-113) | OOP1|OUT OF PHASE 1; PHYB|phytochrome B |
| CRO_T005662 | AT3G20050 (2.00E-60) | ATTCP-1|T-complex protein 1 alpha subunit |
| CRO_T006793 | AT5G27600 (9.00E-19) | LACS7|long-chain acyl-CoA synthetase 7 |
| CRO_T027165 | AT1G79390 (1.00E-48) | unknown protein |
| CRO_T027189 | AT4G35890 (2.00E-14) | LARP1c|La related protein 1c |
| CRO_T028045 | AT5G18525 (6.00E-15) | protein serine/threonine kinases; protein tyrosine kinases; ATP binding; protein kinases |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001256 | NURF complex regulation of ARF protein signal transduction ATP-dependent chromatin remodeling Transcription_related, Transcription regulator: SNF2 nucleosome binding ARF guanyl-nucleotide exchange factor activity Endocytosis positive regulation of GTPase activity vesicle-mediated transport helicase activity ATPase activity | details |
| TreatCFM001564 | RNA degradation RNA processing response to potassium ion Thyroid hormone signaling pathway nuclear-transcribed mRNA catabolic process, nonsense-mediated decay regulation of alternative mRNA splicing, via spliceosome RNA catabolic process potassium ion transport 5'-3' DNA helicase activity nuclear body exon-exon junction complex RNA helicase activity DNA duplex unwinding RNA polymerase II transcription cofactor activity poly(A) RNA binding ATP binding single-stranded DNA binding mRNA binding regulation of transcription from RNA polymerase II promoter DNA replication mediator complex cytoplasm | details |
Expression profiles
 Show details about module gene expression profiling |