TreatCFM001256's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| NURF complex | 0.002955301 | GO:0016589 |
| regulation of ARF protein signal transduction | 0.005907982 | GO:0032012 |
| ATP-dependent chromatin remodeling | 0.005907982 | GO:0043044 |
| Transcription_related, Transcription regulator: SNF2 | 0.008130157 | TF family |
| nucleosome binding | 0.012867585 | GO:0031491 |
| ARF guanyl-nucleotide exchange factor activity | 0.012867585 | GO:0005086 |
| Endocytosis | 0.017603897 | KEGG pathway |
| positive regulation of GTPase activity | 0.021115595 | GO:0043547 |
| vesicle-mediated transport | 0.026460512 | GO:0016192 |
| helicase activity | 0.047270771 | GO:0004386 |
| ATPase activity | 0.047270771 | GO:0016887 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002870 | AT3G43300 (0) | ATMIN7|HOPM interactor 7; BEN1|BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1 |
| CRO_T005595 | AT2G17990 (6.00E-98) | |
| CRO_T023099 | AT1G48090 (0) | calcium-dependent lipid-binding family protein |
| CRO_T027189 | AT4G35890 (2.00E-14) | LARP1c|La related protein 1c |
| CRO_T027566 | AT3G06400 (0) | CHR11|chromatin-remodeling protein 11 |
| CRO_T028584 | AT4G14145 (3.00E-28) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000684 | detection of light stimulus signaling receptor activity cellular protein modification process Fatty acid metabolism 3-phosphoinositide biosynthesis cutin biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis long-chain fatty acid activation oleate biosynthesis I (plants) sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) superpathway of phospholipid biosynthesis II (plants) phosphatidylcholine acyl editing palmitate biosynthesis II (bacteria and plants) suberin monomers biosynthesis unfolded protein binding | details |
| TreatCFM000929 | L-tryptophan degradation VI (via tryptamine) NURF complex mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) xanthine catabolic process ATP-dependent chromatin remodeling oxidoreductase activity, acting on the aldehyde or oxo group of donors xanthine dehydrogenase activity nucleosome binding ribosomal large subunit assembly ATP synthesis coupled proton transport Carotenoid biosynthesis Transcription_related, Transcription regulator: SNF2 | details |
| TreatCFM000985 | transcription from RNA polymerase III promoter DNA-directed RNA polymerase III complex ATP binding RNA polymerase III activity cytosolic large ribosomal subunit ESCRT I complex NURF complex Transcription_related, Transcription regulator: SNF2 mitochondrial intermembrane space biotin-carboxyl carrier protein assembly fatty acid biosynthesis initiation I seleno-amino acid biosynthesis CCR4-NOT complex octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:2.1.2: Ankyrin Repeat Domain Kinase Transcription_related, Transcription factor: BES1 cystathionine gamma-lyase activity phosphatidic acid transporter activity L-cystine L-cysteine-lyase (deaminating) L-cysteine desulfhydrase activity protein complex binding NADPH:quinone reductase activity cystathionine beta-lyase activity biotin carboxylase activity nucleosome binding | details |
| TreatCFM001423 | NURF complex ATP-dependent chromatin remodeling Transcription_related, Transcription regulator: SNF2 mitochondrial respiratory chain complex I aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation response to cytokinin protein processing nucleosome binding | details |
| TreatCFM001530 | mevalonate pathway I purine nucleotide metabolic process adenosine ribonucleotides de novo biosynthesis nucleoside triphosphate adenylate kinase activity acetyl-CoA C-acetyltransferase activity adenylate kinase activity Transcription_related, Transcription factor: GRAS single organism reproductive process reproductive structure development nucleotide phosphorylation post-embryonic development | details |
| TreatCFM002160 | phosphoribosylanthranilate isomerase activity sucrose-phosphate synthase activity nectar secretion sucrose biosynthetic process protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway sucrose synthase activity tryptophan biosynthetic process ESCRT II complex L-tryptophan biosynthesis reactive oxygen species degradation sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II superoxide radicals degradation Biosynthesis of amino acids Endocytosis Starch and sucrose metabolism | details |
Expression profiles
 Show details about module gene expression profiling |