TreatCFM000688's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| pore complex | 0.00347492 | GO:0046930 |
| integral component of chloroplast outer membrane | 0.00347492 | GO:0031359 |
| etioplast membrane | 0.00347492 | GO:0034426 |
| regulation of ion transmembrane transport | 0.004432624 | GO:0034765 |
| Wnt signaling pathway | 0.005316398 | KEGG pathway |
| porin activity | 0.010385645 | GO:0015288 |
| voltage-gated cation channel activity | 0.010385645 | GO:0022843 |
| histone acetylation | 0.014020058 | GO:0016573 |
| histone acetyltransferase activity | 0.022048306 | GO:0004402 |
| transcription cofactor activity | 0.022048306 | GO:0003712 |
| Transcription_related, Transcription factor: C3H | 0.024778988 | TF family |
| Transcription_related, Transcription regulator: PHD | 0.024778988 | TF family |
| Transcription_related, Transcription factor: bHLH | 0.026178498 | TF family |
| RNA transport | 0.040243127 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003721 | AT1G16710 (0) | HAC12|histone acetyltransferase of the CBP family 12 |
| CRO_T006188 | AT3G18640 (1.00E-17) | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| CRO_T008083 | AT1G34140 (2.00E-35) | PAB1|poly(A) binding protein 1 |
| CRO_T018200 | AT4G30980 (7.00E-20) | LRL2|LJRHL1-like 2 |
| CRO_T021112 | AT3G52660 (2.00E-13) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T027126 | AT5G42960 (1.00E-56) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001501 | Wnt signaling pathway ruffle membrane Transcription_related, Transcription regulator: PHD negative regulation of nucleic acid-templated transcription regulation of ruffle assembly protein methylation protein methyltransferase activity transcription corepressor activity histone acetylation histone acetyltransferase activity transcription cofactor activity phosphatidylinositol binding | details |
| TreatCFM001727 | UMP biosynthesis I Wnt signaling pathway negative regulation of apoptotic process pyrimidine ribonucleotide biosynthetic process urea cycle aspartate carbamoyltransferase activity Apelin signaling pathway Pyrimidine metabolism 'de novo' pyrimidine nucleobase biosynthetic process histone acetylation cellular amino acid metabolic process Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription regulator: Jumonji Transcription_related, Transcription regulator: PHD transcription cofactor activity histone acetyltransferase activity | details |
| TreatCFM001818 | RNA degradation porin activity AU-rich element binding voltage-gated cation channel activity integral component of chloroplast outer membrane etioplast membrane pore complex Cellular senescence exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay deadenylation-dependent decapping of nuclear-transcribed mRNA U1 snRNA 3'-end processing U5 snRNA 3'-end processing regulation of ion transmembrane transport exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) nuclear polyadenylation-dependent tRNA catabolic process cytoplasmic mRNA processing body assembly nuclear polyadenylation-dependent mRNA catabolic process nuclear polyadenylation-dependent rRNA catabolic process nuclear mRNA surveillance U4 snRNA 3'-end processing nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' cytoplasmic exosome (RNase complex) nuclear exosome (RNase complex) Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase cellular macromolecule biosynthetic process cytoplasmic mRNA processing body DNA metabolic process Transcription_related, Transcription factor: B3 | details |
| TreatCFM002103 | extended VTC2 cycle GDP-L-galactose biosynthesis VTC2 cycle L-ascorbate biosynthesis I (L-galactose pathway) Ascorbate and aldarate metabolism Autophagy - yeast Wnt signaling pathway GDP-mannose 3,5-epimerase activity Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase transcription cofactor activity histone acetyltransferase activity Transcription_related, Transcription regulator: PHD histone acetylation coenzyme binding Transcription_related, Transcription factor: FAR1 | details |
Expression profiles
 Show details about module gene expression profiling |