TreatCFM001818's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| RNA degradation | 0.000950141 | KEGG pathway |
| porin activity | 0.004047267 | GO:0015288 |
| AU-rich element binding | 0.004047267 | GO:0017091 |
| voltage-gated cation channel activity | 0.004047267 | GO:0022843 |
| integral component of chloroplast outer membrane | 0.006434268 | GO:0031359 |
| etioplast membrane | 0.006434268 | GO:0034426 |
| pore complex | 0.006434268 | GO:0046930 |
| Cellular senescence | 0.008036183 | KEGG pathway |
| exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay | 0.010033801 | GO:0043928 |
| deadenylation-dependent decapping of nuclear-transcribed mRNA | 0.010033801 | GO:0000290 |
| U1 snRNA 3'-end processing | 0.010033801 | GO:0034473 |
| U5 snRNA 3'-end processing | 0.010033801 | GO:0034476 |
| regulation of ion transmembrane transport | 0.010033801 | GO:0034765 |
| exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.010033801 | GO:0000467 |
| nuclear polyadenylation-dependent tRNA catabolic process | 0.010033801 | GO:0071038 |
| cytoplasmic mRNA processing body assembly | 0.010033801 | GO:0033962 |
| nuclear polyadenylation-dependent mRNA catabolic process | 0.010033801 | GO:0071042 |
| nuclear polyadenylation-dependent rRNA catabolic process | 0.010033801 | GO:0071035 |
| nuclear mRNA surveillance | 0.010640652 | GO:0071028 |
| U4 snRNA 3'-end processing | 0.011573358 | GO:0034475 |
| nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | 0.011573358 | GO:0034427 |
| cytoplasmic exosome (RNase complex) | 0.012533482 | GO:0000177 |
| nuclear exosome (RNase complex) | 0.012533482 | GO:0000176 |
| Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase | 0.014612969 | kinase family |
| cellular macromolecule biosynthetic process | 0.016707196 | GO:0034645 |
| cytoplasmic mRNA processing body | 0.016856051 | GO:0000932 |
| DNA metabolic process | 0.036673398 | GO:0006259 |
| Transcription_related, Transcription factor: B3 | 0.037082995 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002553 | AT1G79090 (0) | unknown protein |
| CRO_T006932 | AT5G35450 (6.00E-30) | Disease resistance protein (CC-NBS-LRR class) family |
| CRO_T009614 | AT1G78650 (2.00E-87) | POLD3|DNA-directed DNA polymerases |
| CRO_T016097 | AT3G51630 (4.00E-121) | WNK5|with no lysine (K) kinase 5 |
| CRO_T020180 | - | - |
| CRO_T023254 | AT2G21390 (5.00E-11) | Coatomer, alpha subunit |
| CRO_T025322 | AT3G10220 (6.00E-107) | EMB2804|EMBRYO DEFECTIVE 2804 |
| CRO_T027126 | AT5G42960 (1.00E-56) | unknown protein |
| CRO_T032069 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000688 | pore complex integral component of chloroplast outer membrane etioplast membrane regulation of ion transmembrane transport Wnt signaling pathway porin activity voltage-gated cation channel activity histone acetylation histone acetyltransferase activity transcription cofactor activity Transcription_related, Transcription factor: C3H Transcription_related, Transcription regulator: PHD Transcription_related, Transcription factor: bHLH RNA transport | details |
| TreatCFM001191 | glycerophosphodiester phosphodiesterase activity Circadian rhythm - plant Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase Transcription_related, Transcription regulator: Pseudo ARR-B Transcription_related, Transcription regulator: Jumonji phosphorelay signal transduction system lipid metabolic process | details |
| TreatCFM001353 | protein import into nucleus, docking nuclear pore organization intracellular organelle part nuclear pore inner ring protein complex Transcription_related, Transcription factor: E2F-DP Transcription_related, Transcription factor: NF-YB Antigen processing and presentation Cell cycle structural constituent of nuclear pore protein heterodimerization activity | details |
| TreatCFM001414 | protoheme IX ABC transporter activity heme-transporting ATPase activity intracellular outer membrane-bounded periplasmic space coenzyme A transmembrane transporter activity coenzyme A transmembrane transport cytoplasmic mRNA processing body assembly deadenylation-dependent decapping of nuclear-transcribed mRNA RNA degradation heme transport cytochrome complex assembly cytoplasmic mRNA processing body tRNA modification protein peptidyl-prolyl isomerization integral component of membrane peptidyl-prolyl cis-trans isomerase activity mitochondrial inner membrane trans-Golgi network endosome | details |
| TreatCFM001730 | Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase peroxisome matrix targeting signal-1 binding protein import into peroxisome matrix, docking peroxisomal membrane maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) poly(A) RNA binding cytoplasmic translation Peroxisome response to auxin cytosolic large ribosomal subunit | details |
| TreatCFM001731 | phosphoric ester hydrolase activity peroxisome matrix targeting signal-1 binding Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase 3-phosphoinositide biosynthesis protein import into peroxisome matrix, docking phosphatidylinositol-3-phosphate biosynthetic process Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) vacuole organization response to osmotic stress peroxisomal membrane Peroxisome MAPK signaling pathway - plant response to auxin | details |
| TreatCFM001784 | nuclear pore inner ring structural constituent of nuclear pore RNA binding cytoplasmic mRNA processing body assembly deadenylation-dependent decapping of nuclear-transcribed mRNA production of small RNA involved in gene silencing by RNA nuclear pore organization posttranscriptional gene silencing by RNA Transcription_related, Transcription factor: E2F-DP protein import into nucleus, docking cytoplasmic mRNA processing body RNA degradation mRNA processing Transcription_related, Transcription factor: B3 | details |
| TreatCFM001972 | formation of glycosidic bonds, GlycosylTransferases: GTnc deadenylation-dependent decapping of nuclear-transcribed mRNA cytoplasmic mRNA processing body assembly Other types of O-glycan biosynthesis RNA degradation cytoplasmic mRNA processing body cell wall organization | details |
| TreatCFM001973 | formation of glycosidic bonds, GlycosylTransferases: GTnc reactive oxygen species degradation superoxide radicals degradation Other types of O-glycan biosynthesis deadenylation-dependent decapping of nuclear-transcribed mRNA cytoplasmic mRNA processing body assembly catalase activity response to hydrogen peroxide RNA degradation hydrogen peroxide catabolic process cytoplasmic mRNA processing body Golgi membrane Peroxisome | details |
Expression profiles
 Show details about module gene expression profiling |