TreatCFM000744's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| chlorophyll(ide) b reductase activity | 0.001063908 | GO:0034256 |
| chlorophyll cycle | 0.001595037 | plantCyc |
| Glucagon signaling pathway | 0.004875166 | KEGG pathway |
| PSII associated light-harvesting complex II catabolic process | 0.008121675 | GO:0010304 |
| chlorophyll catabolic process | 0.008121675 | GO:0015996 |
| phosphoprotein phosphatase activity | 0.011931004 | GO:0004721 |
| Transcription_related, Transcription regulator: GNAT | 0.013806304 | TF family |
| Porphyrin and chlorophyll metabolism | 0.021389009 | KEGG pathway |
| protein dephosphorylation | 0.043069903 | GO:0006470 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004215 | - | - |
| CRO_T014590 | - | - |
| CRO_T017600 | AT4G32551 (3.00E-19) | LUG|LEUNIG; RON2|ROTUNDA 2 |
| CRO_T018938 | AT5G43380 (2.00E-26) | TOPP6|type one serine/threonine protein phosphatase 6 |
| CRO_T024338 | AT4G19985 (4.00E-40) | Acyl-CoA N-acyltransferases (NAT) superfamily protein |
| CRO_T028615 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000548 | MIS complex nuclear speck Glucagon signaling pathway glucan catabolic process gametophyte development mRNA methylation DNA-templated transcription, initiation mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Ubiquitin_Proteasome_system, E3: RING Basal transcription factors cellular protein metabolic process scopolin beta-glucosidase activity | details |
| TreatCFM000743 | Fatty acid metabolism fatty acid β-oxidation II (peroxisome) jasmonic acid biosynthesis transferase activity, transferring acyl groups other than amino-acyl groups electron carrier activity anchored component of plasma membrane | details |
| TreatCFM001083 | protein homodimerization activity transport of virus in host, tissue to tissue protein-phycocyanobilin linkage cellular response to virus entrainment of circadian clock proteasome assembly gametophyte development regulation of cell division plastid organization shikimate metabolic process response to reactive oxygen species photoreceptor activity shikimate kinase activity [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity proteasome regulatory particle, lid subcomplex chloroplast fission aromatic amino acid family biosynthetic process peptidyl-lysine monomethylation DNA-templated transcription, initiation response to UV-B Glucagon signaling pathway phenylpropanoids methylation (ice plant) syringetin biosynthesis chloroplast outer membrane chromatin 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity myricetin 3'-O-methyltransferase activity protein-lysine N-methyltransferase activity alkaloid biosynthetic process structural molecule activity aromatic compound biosynthetic process | details |
| TreatCFM001241 | proteasome regulatory particle, lid subcomplex cuticle development proteasome assembly plastid organization shikimate metabolic process aromatic amino acid family biosynthetic process Transcription_related, Transcription factor: C2C2-Dof DNA-3-methyladenine glycosylase activity shikimate kinase activity base-excision repair structural molecule activity rRNA processing Base excision repair Proteasome ubiquitin-dependent protein catabolic process | details |
| TreatCFM001627 | Glucagon signaling pathway cutin biosynthesis sporopollenin precursors biosynthesis suberin monomers biosynthesis phosphoprotein phosphatase activity | details |
| TreatCFM002030 | nuclear-transcribed mRNA catabolic process large ribosomal subunit rRNA binding acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis ribosomal large subunit assembly cytoplasmic translation rRNA processing preribosome, large subunit precursor Phenylpropanoid biosynthesis cytosolic large ribosomal subunit nucleolus Spliceosome Transcription_related, Transcription factor: ERF Transcription_related, Transcription factor: MYB | details |
Expression profiles
 Show details about module gene expression profiling |