TreatCFM001083's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein homodimerization activity | 0.010449756 | GO:0042803 |
| transport of virus in host, tissue to tissue | 0.018094049 | GO:0046741 |
| protein-phycocyanobilin linkage | 0.018094049 | GO:0017009 |
| cellular response to virus | 0.018094049 | GO:0098586 |
| entrainment of circadian clock | 0.018983319 | GO:0009649 |
| proteasome assembly | 0.018983319 | GO:0043248 |
| gametophyte development | 0.018983319 | GO:0048229 |
| regulation of cell division | 0.018983319 | GO:0051302 |
| plastid organization | 0.018983319 | GO:0009657 |
| shikimate metabolic process | 0.018983319 | GO:0019632 |
| response to reactive oxygen species | 0.018983319 | GO:0000302 |
| photoreceptor activity | 0.020164425 | GO:0009881 |
| shikimate kinase activity | 0.020164425 | GO:0004765 |
| [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 0.020164425 | GO:0030785 |
| proteasome regulatory particle, lid subcomplex | 0.023122498 | GO:0008541 |
| chloroplast fission | 0.024641645 | GO:0010020 |
| aromatic amino acid family biosynthetic process | 0.025012618 | GO:0009073 |
| peptidyl-lysine monomethylation | 0.025012618 | GO:0018026 |
| DNA-templated transcription, initiation | 0.025157414 | GO:0006352 |
| response to UV-B | 0.025282319 | GO:0010224 |
| Glucagon signaling pathway | 0.026046121 | KEGG pathway |
| phenylpropanoids methylation (ice plant) | 0.029521501 | plantCyc |
| syringetin biosynthesis | 0.029521501 | plantCyc |
| chloroplast outer membrane | 0.033344932 | GO:0009707 |
| chromatin | 0.033344932 | GO:0000785 |
| 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity | 0.03451146 | GO:0030766 |
| myricetin 3'-O-methyltransferase activity | 0.03451146 | GO:0033799 |
| protein-lysine N-methyltransferase activity | 0.03451146 | GO:0016279 |
| alkaloid biosynthetic process | 0.035512853 | GO:0009821 |
| structural molecule activity | 0.036219377 | GO:0005198 |
| aromatic compound biosynthetic process | 0.041348332 | GO:0019438 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000941 | AT5G55490 (2.00E-115) | ATGEX1|GAMETE EXPRESSED PROTEIN 1 |
| CRO_T010837 | AT3G07670 (7.00E-57) | Rubisco methyltransferase family protein |
| CRO_T011085 | AT5G42140 (5.00E-20) | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain |
| CRO_T011555 | AT3G26900 (2.00E-31) | ATSKL1|shikimate kinase-like 1 |
| CRO_T012311 | AT3G12920 (4.00E-60) | BRG3|BOI-related gene 3 |
| CRO_T014911 | AT1G50360 (0) | ATVIIIA|MYOSIN VIII A |
| CRO_T017600 | AT4G32551 (3.00E-19) | LUG|LEUNIG; RON2|ROTUNDA 2 |
| CRO_T018938 | AT5G43380 (2.00E-26) | TOPP6|type one serine/threonine protein phosphatase 6 |
| CRO_T019314 | AT5G54160 (4.00E-45) | ATOMT1|O-methyltransferase 1; COMT1|caffeate O-methyltransferase 1 |
| CRO_T019846 | AT4G19006 (2.00E-160) | Proteasome component (PCI) domain protein |
| CRO_T027529 | AT5G51020 (3.00E-117) | CAA33|constitutive activator of AAA-ATPase; CRL|CRUMPLED LEAF |
| CRO_T028285 | AT1G54140 (8.00E-54) | TAF9|TBP-ASSOCIATED FACTOR 9; TAFII21|TATA binding protein associated factor 21kDa subunit |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000548 | MIS complex nuclear speck Glucagon signaling pathway glucan catabolic process gametophyte development mRNA methylation DNA-templated transcription, initiation mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Ubiquitin_Proteasome_system, E3: RING Basal transcription factors cellular protein metabolic process scopolin beta-glucosidase activity | details |
| TreatCFM000744 | chlorophyll(ide) b reductase activity chlorophyll cycle Glucagon signaling pathway PSII associated light-harvesting complex II catabolic process chlorophyll catabolic process phosphoprotein phosphatase activity Transcription_related, Transcription regulator: GNAT Porphyrin and chlorophyll metabolism protein dephosphorylation | details |
| TreatCFM001241 | proteasome regulatory particle, lid subcomplex cuticle development proteasome assembly plastid organization shikimate metabolic process aromatic amino acid family biosynthetic process Transcription_related, Transcription factor: C2C2-Dof DNA-3-methyladenine glycosylase activity shikimate kinase activity base-excision repair structural molecule activity rRNA processing Base excision repair Proteasome ubiquitin-dependent protein catabolic process | details |
| TreatCFM001462 | negative regulation of apoptotic process entrainment of circadian clock mitochondrial intermembrane space chromatin response to UV-B iron-sulfur cluster assembly cutin biosynthesis sporopollenin precursors biosynthesis suberin monomers biosynthesis photoreceptor activity signal transduction | details |
| TreatCFM001574 | Transcription_related, Transcription regulator: Rcd1-like hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds CCR4-NOT core complex DNA-templated transcription, initiation negative regulation of translation nitrogen compound metabolic process cellular protein metabolic process Alanine, aspartate and glutamate metabolism cytoplasmic mRNA processing body Basal transcription factors RNA degradation formation of glycosidic bonds, GlycosylTransferases: GTnc protein heterodimerization activity transferase activity, transferring acyl groups | details |
| TreatCFM001607 | mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity sulfiredoxin activity nuclear speck MIS complex protein-lysine N-methyltransferase activity single-organism transport gametophyte development mRNA methylation peptidyl-lysine monomethylation chloroplast part chloroplast membrane part thylakoid cellular protein metabolic process protein transport single-organism cellular process protein transporter activity | details |
| TreatCFM001627 | Glucagon signaling pathway cutin biosynthesis sporopollenin precursors biosynthesis suberin monomers biosynthesis phosphoprotein phosphatase activity | details |
| TreatCFM001800 | proteasome regulatory particle, lid subcomplex proteasome assembly glycerophospholipid biosynthetic process DNA-3-methyladenine glycosylase activity structural molecule activity base-excision repair Base excision repair Proteasome glutathione transferase activity protein disulfide oxidoreductase activity Ubiquitin mediated proteolysis glutathione metabolic process electron carrier activity cell redox homeostasis ubiquitin-dependent protein catabolic process | details |
| TreatCFM001976 | pyruvate decarboxylation to acetyl CoA pyruvate dehydrogenase (acetyl-transferring) activity acetyl-CoA biosynthetic process from pyruvate Carbon metabolism photoreceptor activity entrainment of circadian clock response to UV-B anatomical structure development single-organism developmental process Transcription_related, Transcription factor: HB chromatin chromatin binding protein homodimerization activity regulation of cellular process signal transduction | details |
| TreatCFM002030 | nuclear-transcribed mRNA catabolic process large ribosomal subunit rRNA binding acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis ribosomal large subunit assembly cytoplasmic translation rRNA processing preribosome, large subunit precursor Phenylpropanoid biosynthesis cytosolic large ribosomal subunit nucleolus Spliceosome Transcription_related, Transcription factor: ERF Transcription_related, Transcription factor: MYB | details |
| TreatCFM002109 | 3'-tRNA processing endoribonuclease activity tRNA 3'-trailer cleavage, endonucleolytic deoxyribonucleoside diphosphate metabolic process RNA splicing, via transesterification reactions proteasome regulatory particle, lid subcomplex proteasome assembly deoxyribonucleotide biosynthetic process regulation of cell cycle ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor ribonucleoside-diphosphate reductase complex structural molecule activity regulation of flower development Transcription_related, Transcription factor: MYB multicellular organism development ubiquitin-dependent protein catabolic process Proteasome Purine metabolism RNA transport | details |
Expression profiles
 Show details about module gene expression profiling |