TreatCFM000864's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| spermidine biosynthesis I | 0.003897828 | plantCyc |
| spermine biosynthesis | 0.003897828 | plantCyc |
| superpathway of polyamine biosynthesis II | 0.003897828 | plantCyc |
| zinc ion binding | 0.00433163 | GO:0008270 |
| ubiquitin ligase complex | 0.006725653 | GO:0000151 |
| clathrin adaptor complex | 0.006725653 | GO:0030131 |
| ubiquitin binding | 0.014830334 | GO:0043130 |
| Transcription_related, Transcription factor: ERF | 0.022011556 | TF family |
| Cysteine and methionine metabolism | 0.027466512 | KEGG pathway |
| Lysosome | 0.027466512 | KEGG pathway |
| Ras signaling pathway | 0.027466512 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000785 | AT3G61370 (7.00E-14) | Protein of unknown function (DUF3245) |
| CRO_T003800 | AT2G42160 (7.00E-27) | BRIZ1|BRAP2 RING ZnF UBP domain-containing protein 1 |
| CRO_T006840 | AT2G21730 (2.00E-133) | CAD2|cinnamyl alcohol dehydrogenase homolog 2 |
| CRO_T016066 | AT1G02475 (4.00E-48) | Polyketide cyclase/dehydrase and lipid transport superfamily protein |
| CRO_T018000 | AT3G25890 (7.00E-19) | CRF11|cytokinin response factor 11 |
| CRO_T026334 | AT5G53120 (5.00E-141) | ATSPDS3|SPERMIDINE SYNTHASE 3 |
| CRO_T029514 | AT1G10730 (0) | AP1M1|adaptor protein-1 mu-adaptin 1 |
| CRO_T032927 | AT3G28210 (5.00E-56) | SAP12|STRESS-ASSOCIATED PROTEIN 12 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000259 | Oxidative phosphorylation ATP synthesis coupled proton transport proton-transporting ATPase activity, rotational mechanism hydrogen ion transmembrane transporter activity proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATP synthase complex, catalytic core F(1) ATP hydrolysis coupled proton transport Progesterone-mediated oocyte maturation Protein_kinases_phosphatases, PPC:1.3.7: Receptor like protein kinase/Receptor lectin kinase like protein mitochondrion methyl indole-3-acetate esterase activity ketol-acid reductoisomerase activity photosynthetic acclimation indoleacetic acid conjugate metabolic process ATPase activity, coupled to transmembrane movement of ions, rotational mechanism valine biosynthetic process phosphatidylglycerol biosynthetic process CDP-diacylglycerol biosynthesis II L-valine biosynthesis methyl indole-3-acetate interconversion CDP-diacylglycerol biosynthetic process phosphatidate cytidylyltransferase activity | details |
| TreatCFM001590 | long-chain fatty acid-CoA ligase activity condensed chromosome chromosome condensation long-chain fatty acid metabolic process mitotic nuclear division Cell cycle - yeast Fatty acid metabolism cutin biosynthesis fatty acid β-oxidation II (peroxisome) long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |