TreatCFM000259's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Oxidative phosphorylation | 0.000371382 | KEGG pathway |
| ATP synthesis coupled proton transport | 0.000513701 | GO:0015986 |
| proton-transporting ATPase activity, rotational mechanism | 0.009683157 | GO:0046961 |
| hydrogen ion transmembrane transporter activity | 0.009683157 | GO:0015078 |
| proton-transporting ATP synthase activity, rotational mechanism | 0.009683157 | GO:0046933 |
| proton-transporting ATP synthase complex, catalytic core F(1) | 0.011740036 | GO:0045261 |
| ATP hydrolysis coupled proton transport | 0.012945885 | GO:0015991 |
| Progesterone-mediated oocyte maturation | 0.013276284 | KEGG pathway |
| Protein_kinases_phosphatases, PPC:1.3.7: Receptor like protein kinase/Receptor lectin kinase like protein | 0.013286484 | kinase family |
| mitochondrion | 0.027123573 | GO:0005739 |
| methyl indole-3-acetate esterase activity | 0.027387814 | GO:0080030 |
| ketol-acid reductoisomerase activity | 0.027387814 | GO:0004455 |
| photosynthetic acclimation | 0.03051342 | GO:0009643 |
| indoleacetic acid conjugate metabolic process | 0.03051342 | GO:0033473 |
| ATPase activity, coupled to transmembrane movement of ions, rotational mechanism | 0.034221623 | GO:0044769 |
| valine biosynthetic process | 0.036602046 | GO:0009099 |
| phosphatidylglycerol biosynthetic process | 0.040653326 | GO:0006655 |
| CDP-diacylglycerol biosynthesis II | 0.043290453 | plantCyc |
| L-valine biosynthesis | 0.043290453 | plantCyc |
| methyl indole-3-acetate interconversion | 0.043290453 | plantCyc |
| CDP-diacylglycerol biosynthetic process | 0.043540415 | GO:0016024 |
| phosphatidate cytidylyltransferase activity | 0.048850505 | GO:0004605 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000605 | AT1G08760 (7.00E-27) | Plant protein of unknown function (DUF936) |
| CRO_T001241 | - | - |
| CRO_T003099 | ATMG00640 (7.00E-54) | ORF25|hydrogen ion transporting ATP synthases, rotational mechanism; zinc ion binding |
| CRO_T003231 | AT3G58610 (0) | ketol-acid reductoisomerase |
| CRO_T003338 | AT5G36960 (4.00E-11) | unknown protein |
| CRO_T003372 | AT1G33990 (2.00E-42) | ATMES14|METHYL ESTERASE 14 |
| CRO_T004142 | AT5G60930 (5.00E-30) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T005350 | - | - |
| CRO_T007720 | AT5G25310 (3.00E-141) | Exostosin family protein |
| CRO_T009691 | AT2G37130 (2.00E-121) | Peroxidase superfamily protein |
| CRO_T011801 | AT3G53940 (2.00E-14) | Mitochondrial substrate carrier family protein |
| CRO_T011930 | AT2G46225 (2.00E-54) | ABIL1|ABI-1-like 1 |
| CRO_T012057 | AT5G60750 (4.00E-85) | SCO4|snowy cotyledon 4 |
| CRO_T017635 | AT1G49240 (0) | ACT8|actin 8; FIZ1|FRIZZY AND KINKED SHOOTS |
| CRO_T018000 | AT3G25890 (7.00E-19) | CRF11|cytokinin response factor 11 |
| CRO_T019680 | AT2G07725 (3.00E-40) | Ribosomal L5P family protein |
| CRO_T022480 | ATMG01190 (9.00E-120) | ATP1|ATP synthase subunit 1 |
| CRO_T022913 | AT3G26620 (2.00E-38) | LBD23|LOB domain-containing protein 23 |
| CRO_T026885 | AT3G57570 (2.00E-111) | ARM repeat superfamily protein |
| CRO_T028510 | AT1G24350 (3.00E-49) | Acid phosphatase/vanadium-dependent haloperoxidase-related protein |
| CRO_T028717 | AT4G30996 (3.00E-22) | NKS1|NA(+)- AND K(+)-SENSITIVE 1 |
| CRO_T028798 | ATMG01190 (3.00E-55) | ATP1|ATP synthase subunit 1 |
| CRO_T030450 | AT1G62430 (2.00E-169) | ATCDS1|CDP-diacylglycerol synthase 1 |
| CRO_T030637 | - | - |
| CRO_T031430 | ATMG00510 (3.00E-137) | NAD7|NADH dehydrogenase subunit 7 |
| CRO_T032406 | AT3G60050 (2.00E-20) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T032593 | AT2G07698 (0) | ATPase, F1 complex, alpha subunit protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000161 | Oxidative phosphorylation mitochondrial inner membrane proton-transporting ATP synthase complex, catalytic core F(1) proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism ATP hydrolysis coupled proton transport ATP synthesis coupled proton transport hydrogen ion transmembrane transport photosynthetic acclimation PPAR signaling pathway proton-transporting two-sector ATPase complex, catalytic domain ATPase activity, coupled to transmembrane movement of ions, rotational mechanism ATP biosynthetic process electron transport chain cation-transporting ATPase activity hydrogen ion transmembrane transporter activity cytochrome-c oxidase activity | details |
| TreatCFM000249 | Antigen processing and presentation ATPase activity, coupled to transmembrane movement of substances hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: NF-YB organic substance transport photosynthetic acclimation regulation of vesicle fusion single-organism transport activation of GTPase activity lipid transport Transcription_related, Transcription factor: NAC regulation of transcription, DNA-templated | details |
| TreatCFM000314 | L-valine biosynthesis ketol-acid reductoisomerase activity valine biosynthetic process isoleucine biosynthetic process 2-Oxocarboxylic acid metabolism Transcription_related, Transcription factor: C3H isomerase activity | details |
| TreatCFM000443 | L-valine biosynthesis ketol-acid reductoisomerase activity valine biosynthetic process isoleucine biosynthetic process cullin deneddylation positive regulation of G2/M transition of mitotic cell cycle 2-Oxocarboxylic acid metabolism isomerase activity Transcription_related, Transcription factor: C3H Ubiquitin_Proteasome_system, E3: U-box COP9 signalosome ubiquitin-dependent protein catabolic process ubiquitin-protein transferase activity copper ion binding proteasome complex | details |
| TreatCFM000511 | Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX photosynthetic acclimation Plant-pathogen interaction regulation of membrane potential voltage-gated potassium channel activity potassium ion transmembrane transport response to stress peptidase activity | details |
| TreatCFM000795 | peptidase activity photosynthetic acclimation trans-lycopene biosynthesis II (plants) acetylglucosaminyltransferase activity Carotenoid biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM000810 | Protein_kinases_phosphatases, PPC:1.3.7: Receptor like protein kinase/Receptor lectin kinase like protein CDP-diacylglycerol biosynthesis II CDP-diacylglycerol biosynthesis I xylogalacturonan biosynthesis phosphatidylglycerol biosynthetic process plant-type cell wall modification involved in multidimensional cell growth CDP-diacylglycerol biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Fanconi anemia pathway Glycerophospholipid metabolism calcium-transporting ATPase activity phosphatidate cytidylyltransferase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity calcium ion transmembrane transport defense response to fungus cell wall biogenesis xyloglucan metabolic process plant-type cell wall organization xyloglucan:xyloglucosyl transferase activity hydrogen peroxide catabolic process metal ion binding | details |
| TreatCFM000864 | spermidine biosynthesis I spermine biosynthesis superpathway of polyamine biosynthesis II zinc ion binding ubiquitin ligase complex clathrin adaptor complex ubiquitin binding Transcription_related, Transcription factor: ERF Cysteine and methionine metabolism Lysosome Ras signaling pathway | details |
| TreatCFM000925 | Focal adhesion xylogalacturonan biosynthesis plant-type cell wall modification involved in multidimensional cell growth Fanconi anemia pathway Protein_kinases_phosphatases, PPC:2.1.2: Ankyrin Repeat Domain Kinase formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc calcium ion transmembrane transport cell wall biogenesis xyloglucan metabolic process calcium-transporting ATPase activity DNA topoisomerase type I activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity motor activity myosin complex actin binding xyloglucan:xyloglucosyl transferase activity | details |
| TreatCFM001013 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein repair peptide-methionine (R)-S-oxide reductase activity calcium-dependent phospholipid binding acetylglucosaminyltransferase activity ATP-dependent helicase activity DNA recombination response to oxidative stress | details |
| TreatCFM001288 | Protein_kinases_phosphatases, PPC:1.3.7: Receptor like protein kinase/Receptor lectin kinase like protein Progesterone-mediated oocyte maturation virus induced gene silencing posttranscriptional gene silencing by RNA cytoskeleton scopoletin biosynthesis chlorogenic acid biosynthesis I Phenylpropanoid biosynthesis phenylpropanoids methylation (ice plant) suberin monomers biosynthesis defense response to fungus plant-type cell wall organization hydrogen peroxide catabolic process O-methyltransferase activity | details |
| TreatCFM001289 | histone methyltransferase activity (H3-K9 specific) methyl-CpNpN binding steroid dehydrogenase activity methyl-CpNpG binding alcohol dehydrogenase (NADP+) activity NADP+ binding double-stranded methylated DNA binding oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen methyl-CpG binding monooxygenase activity endopeptidase activity enzyme regulator activity Cytochrome_P450, Cytochrome P450: CYP714A response to toxic substance maintenance of DNA methylation histone H3-K9 methylation response to absence of light regulation of protein catabolic process response to red light intracellular transport response to far red light positive regulation of G2/M transition of mitotic cell cycle cullin deneddylation proteasome storage granule Sec61 translocon complex | details |
| TreatCFM001333 | UDP-glucuronate biosynthetic process valine biosynthetic process ketol-acid reductoisomerase activity UDP-glucose 6-dehydrogenase activity isoleucine biosynthetic process glycosaminoglycan biosynthetic process L-valine biosynthesis UDP-α-D-glucuronate biosynthesis (from UDP-glucose) UDP-D-xylose biosynthesis UDP-sugars interconversion 2-Oxocarboxylic acid metabolism isomerase activity Pentose and glucuronate interconversions NAD binding copper ion binding | details |
| TreatCFM002085 | L-arginine biosynthesis II (acetyl cycle) L-ornithine biosynthesis I tetrapyrrole biosynthesis I (from glutamate) Transcription_related, Transcription regulator: GNAT acetyl-CoA:L-glutamate N-acetyltransferase activity metal ion transmembrane transporter activity ATP-dependent helicase activity 2-Oxocarboxylic acid metabolism arginine biosynthetic process DNA recombination metal ion transport unfolded protein binding response to stress | details |
Expression profiles
 Show details about module gene expression profiling |