TreatCFM000910's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ethylene biosynthesis I (plants) | 0.004336788 | plantCyc |
| long-day photoperiodism | 0.009087573 | GO:0048571 |
| cellular response to starvation | 0.009087573 | GO:0009267 |
| nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | 0.012113542 | GO:0000184 |
| 5'-3' exoribonuclease activity | 0.01349211 | GO:0004534 |
| RNA phosphodiester bond hydrolysis, exonucleolytic | 0.01512985 | GO:0090503 |
| sugar mediated signaling pathway | 0.01512985 | GO:0010182 |
| response to wounding | 0.01512985 | GO:0009611 |
| salicylic acid mediated signaling pathway | 0.019649633 | GO:0009863 |
| jasmonic acid mediated signaling pathway | 0.019649633 | GO:0009867 |
| Insulin signaling pathway | 0.024985946 | KEGG pathway |
| cytosol | 0.029459274 | GO:0005829 |
| plasma membrane | 0.029459274 | GO:0005886 |
| cytoplasmic mRNA processing body | 0.029459274 | GO:0000932 |
| defense response to bacterium | 0.030847253 | GO:0042742 |
| Ribosome biogenesis in eukaryotes | 0.047999559 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000112 | AT1G07000 (7.00E-30) | ATEXO70B2|exocyst subunit exo70 family protein B2 |
| CRO_T005052 | AT1G75660 (0) | AtXRN3|5'-3' EXORIBONUCLEASE 3 |
| CRO_T006574 | AT1G62790 (2.00E-12) | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| CRO_T007646 | AT2G36690 (1.00E-29) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T015800 | AT1G61667 (4.00E-43) | Protein of unknown function, DUF538 |
| CRO_T029420 | AT1G32710 (1.00E-16) | Cytochrome c oxidase, subunit Vib family protein |
| CRO_T031085 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000027 | Protein_kinases_phosphatases, PPC:1.5.2: LRK10 Like Kinase (Type 1) PI3K-Akt signaling pathway hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc vindoline and vinblastine biosynthesis NF-kappa B signaling pathway beta-galactosidase activity transferase activity, transferring acyl groups carbohydrate binding carbohydrate metabolic process | details |
| TreatCFM000909 | 5'-3' exoribonuclease activity RNA phosphodiester bond hydrolysis, exonucleolytic phosphate-containing compound metabolic process inorganic diphosphatase activity Insulin signaling pathway protein polyubiquitination proteasome-mediated ubiquitin-dependent protein catabolic process protein ubiquitination involved in ubiquitin-dependent protein catabolic process Ribosome biogenesis in eukaryotes | details |
Expression profiles
 Show details about module gene expression profiling |