TreatCFM000909's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 5'-3' exoribonuclease activity | 0.009654255 | GO:0004534 |
| RNA phosphodiester bond hydrolysis, exonucleolytic | 0.014158109 | GO:0090503 |
| phosphate-containing compound metabolic process | 0.014158109 | GO:0006796 |
| inorganic diphosphatase activity | 0.016082105 | GO:0004427 |
| Insulin signaling pathway | 0.021423803 | KEGG pathway |
| protein polyubiquitination | 0.022217247 | GO:0000209 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.022984358 | GO:0043161 |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.022984358 | GO:0042787 |
| Ribosome biogenesis in eukaryotes | 0.041194722 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000112 | AT1G07000 (7.00E-30) | ATEXO70B2|exocyst subunit exo70 family protein B2 |
| CRO_T001967 | AT2G15580 (5.00E-19) | RING/U-box superfamily protein |
| CRO_T005052 | AT1G75660 (0) | AtXRN3|5'-3' EXORIBONUCLEASE 3 |
| CRO_T006574 | AT1G62790 (2.00E-12) | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| CRO_T011553 | AT4G25040 (2.00E-18) | Uncharacterised protein family (UPF0497) |
| CRO_T023549 | AT1G01050 (2.00E-15) | AtPPa1|pyrophosphorylase 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000311 | formyltetrahydrofolate deformylase activity purine nucleotide binding cyanoalanine nitrilase activity phosphoenolpyruvate carboxykinase activity hydroxymethyl-, formyl- and related transferase activity 3-cyanoalanine hydratase activity cyanide detoxification I L-asparagine degradation I Glyoxylate and dicarboxylate metabolism cyanide catabolic process embryonic pattern specification detoxification of nitrogen compound superpathway of aspartate and asparagine biosynthesis myosin heavy chain kinase activity Pwp2p-containing subcomplex of 90S preribosome gluconeogenesis 'de novo' IMP biosynthetic process Cyanoamino acid metabolism snoRNA binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) amino acid binding mRNA surveillance pathway Ribosome biogenesis in eukaryotes cell division Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM000910 | ethylene biosynthesis I (plants) long-day photoperiodism cellular response to starvation nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 5'-3' exoribonuclease activity RNA phosphodiester bond hydrolysis, exonucleolytic sugar mediated signaling pathway response to wounding salicylic acid mediated signaling pathway jasmonic acid mediated signaling pathway Insulin signaling pathway cytosol plasma membrane cytoplasmic mRNA processing body defense response to bacterium Ribosome biogenesis in eukaryotes | details |
Expression profiles
 Show details about module gene expression profiling |