TreatCFM000919's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| alpha-ketoglutarate transport | 0.006017747 | GO:0015742 |
| cellular protein localization | 0.006017747 | GO:0034613 |
| oxaloacetate(2-) transmembrane transport | 0.006017747 | GO:1902356 |
| ammonia assimilation cycle | 0.006017747 | GO:0019676 |
| alpha-ketoglutarate transmembrane transporter activity | 0.009027555 | GO:0015139 |
| oxaloacetate transmembrane transporter activity | 0.009027555 | GO:0015131 |
| sodium ion transport | 0.010826344 | GO:0006814 |
| malate transmembrane transport | 0.011024551 | GO:0071423 |
| Glycerolipid metabolism | 0.012463464 | KEGG pathway |
| phospholipid remodeling (phosphatidylcholine, yeast) | 0.013451305 | plantCyc |
| phosphatidylcholine acyl editing | 0.016237764 | plantCyc |
| ribosome biogenesis | 0.026575711 | GO:0042254 |
| response to salt stress | 0.033706615 | GO:0009651 |
| malate transmembrane transporter activity | 0.036054238 | GO:0015140 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000583 | AT1G12640 (0) | LPCAT1|lysophosphatidylcholine acyltransferase 1; LPLAT1|lysophospholipid acyltransferase 1 |
| CRO_T000987 | AT4G10620 (3.00E-156) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T002594 | AT1G14500 (6.00E-15) | Ankyrin repeat family protein |
| CRO_T008660 | AT5G12860 (0) | DiT1|dicarboxylate transporter 1 |
| CRO_T017542 | AT4G16630 (4.00E-65) | DEA(D/H)-box RNA helicase family protein |
| CRO_T020078 | AT2G01360 (1.00E-28) | pentatricopeptide (PPR) repeat-containing protein |
| CRO_T021992 | AT1G74630 (0) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T028932 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000920 | positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process recognition of pollen Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) cullin family protein binding N,N-dimethylaniline monooxygenase activity | details |
| TreatCFM001466 | RNA lariat debranching enzyme activity zinc ion binding GTP cyclohydrolase I activity 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III tau-protein kinase activity tetrahydrofolate biosynthesis II tetrahydrofolate biosynthetic process tetrahydrobiopterin biosynthetic process 7,8-dihydroneopterin 3'-triphosphate biosynthetic process Folate biosynthesis RNA modification RNA phosphodiester bond hydrolysis, endonucleolytic mRNA splicing, via spliceosome RNA transport protein homodimerization activity embryo development ending in seed dormancy | details |
| TreatCFM001498 | 7,8-dihydroneopterin 3'-triphosphate biosynthetic process tetrahydrofolate biosynthetic process tetrahydrobiopterin biosynthetic process GTP cyclohydrolase I activity tau-protein kinase activity 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III phospholipid remodeling (phosphatidylcholine, yeast) tetrahydrofolate biosynthesis II Folate biosynthesis N-acetyltransferase activity 2-Oxocarboxylic acid metabolism Glycerolipid metabolism phosphatidylcholine acyl editing Transcription_related, Transcription factor: ERF benzoate biosynthesis I (CoA-dependent, β-oxidative) cellular amino acid biosynthetic process response to stimulus single-organism process regulation of cellular process protein homodimerization activity transferase activity, transferring acyl groups | details |
| TreatCFM001760 | 3-phosphoshikimate 1-carboxyvinyltransferase activity phosphoserine phosphatase activity L-serine biosynthetic process chorismate biosynthetic process response to herbicide aromatic amino acid family biosynthetic process chorismate biosynthesis from 3-dehydroquinate L-serine biosynthesis phospholipid remodeling (phosphatidylcholine, yeast) chloroplast cellular amino acid biosynthetic process phosphatidylcholine acyl editing dephosphorylation Biosynthesis of amino acids Glycerolipid metabolism transferase activity, transferring acyl groups | details |
Expression profiles
 Show details about module gene expression profiling |