TreatCFM001466's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| RNA lariat debranching enzyme activity | 0.002145549 | GO:0008419 |
| zinc ion binding | 0.002145549 | GO:0008270 |
| GTP cyclohydrolase I activity | 0.002145549 | GO:0003934 |
| 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I | 0.002659181 | plantCyc |
| Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III | 0.003541648 | kinase family |
| tau-protein kinase activity | 0.004022012 | GO:0050321 |
| tetrahydrofolate biosynthesis II | 0.005842855 | plantCyc |
| tetrahydrofolate biosynthetic process | 0.006424245 | GO:0046654 |
| tetrahydrobiopterin biosynthetic process | 0.006424245 | GO:0006729 |
| 7,8-dihydroneopterin 3'-triphosphate biosynthetic process | 0.006424245 | GO:0035998 |
| Folate biosynthesis | 0.008502467 | KEGG pathway |
| RNA modification | 0.016367305 | GO:0009451 |
| RNA phosphodiester bond hydrolysis, endonucleolytic | 0.023852324 | GO:0090502 |
| mRNA splicing, via spliceosome | 0.031376631 | GO:0000398 |
| RNA transport | 0.040243127 | KEGG pathway |
| protein homodimerization activity | 0.040368525 | GO:0042803 |
| embryo development ending in seed dormancy | 0.045985392 | GO:0009793 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005759 | AT1G30550 (4.00E-55) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T008828 | AT2G03880 (0) | REME1|required for efficiency of mitochondrial editing 1 |
| CRO_T020517 | AT3G07270 (3.00E-160) | GTP cyclohydrolase I |
| CRO_T021132 | AT1G78530 (2.00E-47) | Protein kinase superfamily protein |
| CRO_T021992 | AT1G74630 (0) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T025620 | AT4G31770 (5.00E-157) | ATDBR1|DEBRANCHING ENZYME 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000751 | RNA transport nuclear matrix nucleobase-containing compound transmembrane transporter activity Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family Ubiquitin_Proteasome_system, DUB: USP tRNA re-export from nucleus meristem initiation tRNA binding thiol-dependent ubiquitin-specific protease activity nuclear pore Ran GTPase binding GTPase activator activity Endocytosis flower development protein deubiquitination | details |
| TreatCFM000833 | Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase RNA lariat debranching enzyme activity NF-kappa B signaling pathway | details |
| TreatCFM000919 | alpha-ketoglutarate transport cellular protein localization oxaloacetate(2-) transmembrane transport ammonia assimilation cycle alpha-ketoglutarate transmembrane transporter activity oxaloacetate transmembrane transporter activity sodium ion transport malate transmembrane transport Glycerolipid metabolism phospholipid remodeling (phosphatidylcholine, yeast) phosphatidylcholine acyl editing ribosome biogenesis response to salt stress malate transmembrane transporter activity | details |
| TreatCFM001467 | GTP cyclohydrolase I activity RNA lariat debranching enzyme activity 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I tetrahydrofolate biosynthesis II tetrahydrobiopterin biosynthetic process tetrahydrofolate biosynthetic process 7,8-dihydroneopterin 3'-triphosphate biosynthetic process Folate biosynthesis RNA modification zinc ion binding RNA phosphodiester bond hydrolysis, endonucleolytic mRNA splicing, via spliceosome protein homodimerization activity RNA transport embryo development ending in seed dormancy | details |
| TreatCFM001498 | 7,8-dihydroneopterin 3'-triphosphate biosynthetic process tetrahydrofolate biosynthetic process tetrahydrobiopterin biosynthetic process GTP cyclohydrolase I activity tau-protein kinase activity 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III phospholipid remodeling (phosphatidylcholine, yeast) tetrahydrofolate biosynthesis II Folate biosynthesis N-acetyltransferase activity 2-Oxocarboxylic acid metabolism Glycerolipid metabolism phosphatidylcholine acyl editing Transcription_related, Transcription factor: ERF benzoate biosynthesis I (CoA-dependent, β-oxidative) cellular amino acid biosynthetic process response to stimulus single-organism process regulation of cellular process protein homodimerization activity transferase activity, transferring acyl groups | details |
| TreatCFM001760 | 3-phosphoshikimate 1-carboxyvinyltransferase activity phosphoserine phosphatase activity L-serine biosynthetic process chorismate biosynthetic process response to herbicide aromatic amino acid family biosynthetic process chorismate biosynthesis from 3-dehydroquinate L-serine biosynthesis phospholipid remodeling (phosphatidylcholine, yeast) chloroplast cellular amino acid biosynthetic process phosphatidylcholine acyl editing dephosphorylation Biosynthesis of amino acids Glycerolipid metabolism transferase activity, transferring acyl groups | details |
| TreatCFM001807 | 3-dehydroquinate biosynthesis I 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I GTP cyclohydrolase I activity tetrahydrofolate biosynthetic process tetrahydrobiopterin biosynthetic process translation 7,8-dihydroneopterin 3'-triphosphate biosynthetic process protein homooligomerization tetrahydrofolate biosynthesis II structural constituent of ribosome Folate biosynthesis Biosynthesis of amino acids Ubiquitin_Proteasome_system, E3 adaptor: F-box protein homodimerization activity | details |
| TreatCFM001827 | Fanconi anemia pathway RNA lariat debranching enzyme activity Endocytosis DNA metabolic process RNA phosphodiester bond hydrolysis, endonucleolytic mRNA splicing, via spliceosome DNA biosynthetic process translational initiation cellular response to DNA damage stimulus positive regulation of GTPase activity DNA repair embryo development ending in seed dormancy nucleotidyltransferase activity GTPase activator activity | details |
Expression profiles
 Show details about module gene expression profiling |