TreatCFM000929's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-tryptophan degradation VI (via tryptamine) | 0.000531915 | plantCyc |
| NURF complex | 0.005212381 | GO:0016589 |
| mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) | 0.005212381 | GO:0000276 |
| xanthine catabolic process | 0.006514994 | GO:0009115 |
| ATP-dependent chromatin remodeling | 0.006514994 | GO:0043044 |
| oxidoreductase activity, acting on the aldehyde or oxo group of donors | 0.017276522 | GO:0016903 |
| xanthine dehydrogenase activity | 0.017276522 | GO:0004854 |
| nucleosome binding | 0.017276522 | GO:0031491 |
| ribosomal large subunit assembly | 0.023415886 | GO:0000027 |
| ATP synthesis coupled proton transport | 0.028583494 | GO:0015986 |
| Carotenoid biosynthesis | 0.032109597 | KEGG pathway |
| Transcription_related, Transcription regulator: SNF2 | 0.044715865 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000757 | AT5G60670 (7.00E-82) | Ribosomal protein L11 family protein |
| CRO_T004980 | AT1G02590 (1.00E-13) | Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein |
| CRO_T022682 | AT4G26210 (1.00E-56) | Mitochondrial ATP synthase subunit G protein |
| CRO_T027566 | AT3G06400 (0) | CHR11|chromatin-remodeling protein 11 |
| CRO_T029321 | AT4G15975 (4.00E-21) | RING/U-box superfamily protein |
| CRO_T031858 | AT5G03345 (3.00E-36) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000985 | transcription from RNA polymerase III promoter DNA-directed RNA polymerase III complex ATP binding RNA polymerase III activity cytosolic large ribosomal subunit ESCRT I complex NURF complex Transcription_related, Transcription regulator: SNF2 mitochondrial intermembrane space biotin-carboxyl carrier protein assembly fatty acid biosynthesis initiation I seleno-amino acid biosynthesis CCR4-NOT complex octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:2.1.2: Ankyrin Repeat Domain Kinase Transcription_related, Transcription factor: BES1 cystathionine gamma-lyase activity phosphatidic acid transporter activity L-cystine L-cysteine-lyase (deaminating) L-cysteine desulfhydrase activity protein complex binding NADPH:quinone reductase activity cystathionine beta-lyase activity biotin carboxylase activity nucleosome binding | details |
| TreatCFM001256 | NURF complex regulation of ARF protein signal transduction ATP-dependent chromatin remodeling Transcription_related, Transcription regulator: SNF2 nucleosome binding ARF guanyl-nucleotide exchange factor activity Endocytosis positive regulation of GTPase activity vesicle-mediated transport helicase activity ATPase activity | details |
| TreatCFM001423 | NURF complex ATP-dependent chromatin remodeling Transcription_related, Transcription regulator: SNF2 mitochondrial respiratory chain complex I aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation response to cytokinin protein processing nucleosome binding | details |
Expression profiles
 Show details about module gene expression profiling |