TreatCFM000946's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| S-methyl-5-thio-α-D-ribose 1-phosphate degradation | 0.002657217 | plantCyc |
| L-aspartate:2-oxoglutarate aminotransferase activity | 0.009596925 | GO:0004069 |
| L-phenylalanine:2-oxoglutarate aminotransferase activity | 0.009596925 | GO:0080130 |
| biosynthetic process | 0.027681891 | GO:0009058 |
| response to stress | 0.027681891 | GO:0006950 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.042670298 | cazy family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002817 | AT1G01480 (2.00E-09) | ACS2|1-amino-cyclopropane-1-carboxylate synthase 2 |
| CRO_T005531 | AT1G74580 (8.00E-48) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T006774 | AT5G35450 (4.00E-38) | Disease resistance protein (CC-NBS-LRR class) family |
| CRO_T017868 | AT3G07290 (1.00E-18) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T022402 | AT5G49410 (3.00E-49) | unknown protein |
| CRO_T028042 | AT2G45460 (5.00E-104) | SMAD/FHA domain-containing protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000438 | Transcription_related, Transcription factor: NF-YC S-methyl-5-thio-α-D-ribose 1-phosphate degradation biosynthetic process L-aspartate:2-oxoglutarate aminotransferase activity L-phenylalanine:2-oxoglutarate aminotransferase activity | details |
| TreatCFM000461 | S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-aspartate:2-oxoglutarate aminotransferase activity L-phenylalanine:2-oxoglutarate aminotransferase activity biosynthetic process | details |
| TreatCFM000939 | S-methyl-5-thio-α-D-ribose 1-phosphate degradation plasma membrane respiratory chain complex I L-phenylalanine:2-oxoglutarate aminotransferase activity L-aspartate:2-oxoglutarate aminotransferase activity ATP synthesis coupled electron transport biosynthetic process small ribosomal subunit mitochondrion | details |
| TreatCFM000986 | organ senescence developmental process involved in reproduction vegetative phase change detection of nutrient glycoprotein ERAD pathway hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc endoplasmic reticulum unfolded protein response N-glycan processing sugar mediated signaling pathway primary root development retrograde transport, endosome to Golgi ER-associated ubiquitin-dependent protein catabolic process mannosyl-oligosaccharide 1,2-alpha-mannosidase activity Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Apelin signaling pathway retromer complex Transcription_related, Transcription factor: HB abscisic acid-activated signaling pathway response to stress Endocytosis | details |
| TreatCFM001048 | Ubiquitin_Proteasome_system, E3: RING transcriptional repressor complex vegetative phase change developmental process involved in reproduction organ senescence detection of nutrient Apelin signaling pathway retromer complex sugar mediated signaling pathway Cell cycle primary root development retrograde transport, endosome to Golgi Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription factor: B3 Transcription_related, Transcription factor: MYB-related Endocytosis | details |
| TreatCFM001533 | D-erythro-sphingosine kinase activity ceramide degradation sphingolipid biosynthetic process Transcription_related, Transcription factor: CAMTA sphingolipid biosynthesis (plants) | details |
| TreatCFM001708 | L-leucine biosynthesis hydro-lyase activity beta-tubulin binding DNA-3-methyladenine glycosylase activity Transcription_related, Transcription regulator: SET Base excision repair Lysine degradation 2-Oxocarboxylic acid metabolism tubulin complex assembly post-chaperonin tubulin folding pathway GTPase activator activity microtubule cytoskeleton organization base-excision repair | details |
| TreatCFM001738 | Base excision repair sepal formation regulation of root meristem growth leaf formation leaf shaping regulation of histone methylation carpel development stamen development leaf vascular tissue pattern formation meristem structural organization DNA-3-methyladenine glycosylase activity regulation of flower development base-excision repair peptidyl-prolyl cis-trans isomerase activity histone binding chromatin binding protein peptidyl-prolyl isomerization | details |
Expression profiles
 Show details about module gene expression profiling |