TreatCFM001738's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Base excision repair | 0.00566078 | KEGG pathway |
| sepal formation | 0.011762945 | GO:0048453 |
| regulation of root meristem growth | 0.011762945 | GO:0010082 |
| leaf formation | 0.011762945 | GO:0010338 |
| leaf shaping | 0.011762945 | GO:0010358 |
| regulation of histone methylation | 0.011762945 | GO:0031060 |
| carpel development | 0.013439194 | GO:0048440 |
| stamen development | 0.013439194 | GO:0048443 |
| leaf vascular tissue pattern formation | 0.015672574 | GO:0010305 |
| meristem structural organization | 0.015672574 | GO:0009933 |
| DNA-3-methyladenine glycosylase activity | 0.018882781 | GO:0008725 |
| regulation of flower development | 0.019972201 | GO:0009909 |
| base-excision repair | 0.021354017 | GO:0006284 |
| peptidyl-prolyl cis-trans isomerase activity | 0.028221841 | GO:0003755 |
| histone binding | 0.028221841 | GO:0042393 |
| chromatin binding | 0.028221841 | GO:0003682 |
| protein peptidyl-prolyl isomerization | 0.033228537 | GO:0000413 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001725 | AT4G10710 (0) | SPT16|global transcription factor C |
| CRO_T005531 | AT1G74580 (8.00E-48) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T007094 | AT2G20440 (7.00E-15) | Ypt/Rab-GAP domain of gyp1p superfamily protein |
| CRO_T022923 | AT3G44600 (1.00E-179) | CYP71|cyclophilin 71 |
| CRO_T027883 | AT1G16800 (1.00E-151) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T028042 | AT2G45460 (5.00E-104) | SMAD/FHA domain-containing protein |
| CRO_T029339 | AT5G57970 (3.00E-90) | DNA glycosylase superfamily protein |
| CRO_T032388 | AT5G16660 (3.00E-35) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000244 | beta-tubulin binding protein tag post-chaperonin tubulin folding pathway microtubule cytoskeleton organization protein sumoylation tubulin complex assembly chromosome organization regulation of translational initiation formation of translation preinitiation complex GTPase activator activity ribosome binding Cell cycle cytosol eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex chromosome eukaryotic 43S preinitiation complex positive regulation of GTPase activity microtubule RNA transport translation initiation factor activity embryo development ending in seed dormancy | details |
| TreatCFM000355 | response to far red light heparan sulfate proteoglycan biosynthetic process positive regulation of biological process red or far-red light signaling pathway glycosaminoglycan biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity core promoter sequence-specific DNA binding glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity transcription from RNA polymerase II promoter transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding poly(A) RNA binding Spliceosome RNA processing Transcription_related, Transcription factor: FAR1 ATP-dependent RNA helicase activity | details |
| TreatCFM000668 | mitochondrial translational elongation positive regulation of transcription from RNA polymerase I promoter t-UTP complex fatty acid elongation -- saturated L-cysteine biosynthesis I seleno-amino acid biosynthesis octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) 90S preribosome palmitate biosynthesis II (bacteria and plants) maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) DNA biosynthetic process hydro-lyase activity RNA processing snoRNA binding DNA-directed DNA polymerase activity poly(A) RNA binding fatty acid biosynthetic process cytoplasm translation elongation factor activity Fatty acid metabolism Ribosome biogenesis in eukaryotes small-subunit processome | details |
| TreatCFM000689 | S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis baicalein degradation (hydrogen peroxide detoxification) L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis wogonin metabolism | details |
| TreatCFM000728 | proteasome regulatory particle, lid subcomplex regulation of protein catabolic process phospholipid transport COPII vesicle coat enzyme regulator activity regulation of catalytic activity ER to Golgi vesicle-mediated transport ubiquitin-dependent protein catabolic process mRNA surveillance pathway Proteasome intracellular protein transport | details |
| TreatCFM000946 | S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-aspartate:2-oxoglutarate aminotransferase activity L-phenylalanine:2-oxoglutarate aminotransferase activity biosynthetic process response to stress formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM000986 | organ senescence developmental process involved in reproduction vegetative phase change detection of nutrient glycoprotein ERAD pathway hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc endoplasmic reticulum unfolded protein response N-glycan processing sugar mediated signaling pathway primary root development retrograde transport, endosome to Golgi ER-associated ubiquitin-dependent protein catabolic process mannosyl-oligosaccharide 1,2-alpha-mannosidase activity Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Apelin signaling pathway retromer complex Transcription_related, Transcription factor: HB abscisic acid-activated signaling pathway response to stress Endocytosis | details |
| TreatCFM000998 | L-leucine biosynthesis DNA-3-methyladenine glycosylase activity hydro-lyase activity protein histidine kinase binding protein metabolic process base-excision repair 2-Oxocarboxylic acid metabolism Base excision repair | details |
| TreatCFM001048 | Ubiquitin_Proteasome_system, E3: RING transcriptional repressor complex vegetative phase change developmental process involved in reproduction organ senescence detection of nutrient Apelin signaling pathway retromer complex sugar mediated signaling pathway Cell cycle primary root development retrograde transport, endosome to Golgi Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription factor: B3 Transcription_related, Transcription factor: MYB-related Endocytosis | details |
| TreatCFM001151 | positive regulation of GTPase activity chromosome organization tubulin complex assembly post-chaperonin tubulin folding pathway regulation of ARF protein signal transduction Cell cycle microtubule cytoskeleton organization ARF guanyl-nucleotide exchange factor activity beta-tubulin binding GTPase activator activity embryo development ending in seed dormancy chromosome microtubule | details |
| TreatCFM001328 | Nucleotide excision repair 1,3-beta-D-glucan synthase activity protein histidine kinase binding DNA-3-methyladenine glycosylase activity Base excision repair (1->3)-beta-D-glucan biosynthetic process protein metabolic process base-excision repair 1,3-beta-D-glucan synthase complex | details |
| TreatCFM001533 | D-erythro-sphingosine kinase activity ceramide degradation sphingolipid biosynthetic process Transcription_related, Transcription factor: CAMTA sphingolipid biosynthesis (plants) | details |
| TreatCFM001678 | Nucleotide excision repair Base excision repair beta-tubulin binding DNA-3-methyladenine glycosylase activity protein histidine kinase binding Group II intron splicing protein metabolic process tubulin complex assembly post-chaperonin tubulin folding pathway microtubule cytoskeleton organization base-excision repair cytochrome complex assembly GTPase activator activity positive regulation of GTPase activity | details |
| TreatCFM001708 | L-leucine biosynthesis hydro-lyase activity beta-tubulin binding DNA-3-methyladenine glycosylase activity Transcription_related, Transcription regulator: SET Base excision repair Lysine degradation 2-Oxocarboxylic acid metabolism tubulin complex assembly post-chaperonin tubulin folding pathway GTPase activator activity microtubule cytoskeleton organization base-excision repair | details |
| TreatCFM001850 | Ubiquitin_Proteasome_system, E3: RING sucrose biosynthetic process nectar secretion protein kinase C-activating G-protein coupled receptor signaling pathway diacylglycerol kinase activity sucrose-phosphate synthase activity phosphatidate metabolism, as a signaling molecule sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose synthase activity Transcription_related, Transcription factor: Orphans Mitophagy - yeast plasmodesma COP9 signalosome photomorphogenesis formation of translation preinitiation complex regulation of translational initiation flower development cytosol eukaryotic translation initiation factor 3 complex eukaryotic 43S preinitiation complex eukaryotic 48S preinitiation complex zinc ion binding plasma membrane Glycerolipid metabolism translation initiation factor activity | details |
| TreatCFM001851 | nectar secretion sucrose biosynthetic process protein kinase C-activating G-protein coupled receptor signaling pathway plasmodesma phosphatidate metabolism, as a signaling molecule sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose-phosphate synthase activity diacylglycerol kinase activity DNA topological change sucrose synthase activity thiol-dependent ubiquitinyl hydrolase activity FoxO signaling pathway protein deubiquitination cytoplasmic translation double-stranded DNA binding Glycerolipid metabolism ubiquitin-dependent protein catabolic process intracellular signal transduction | details |
| TreatCFM001967 | protein transmembrane transport protein localization to organelle snRNA transcription Base excision repair DNA-3-methyladenine glycosylase activity protein channel activity base-excision repair isoflavonoid biosynthesis II benzoate biosynthesis I (CoA-dependent, β-oxidative) peptidase activity | details |
Expression profiles
 Show details about module gene expression profiling |