TreatCFM000949's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phosphopyruvate hydratase activity | 0.003894905 | GO:0004634 |
| glutamate-tRNA ligase activity | 0.003894905 | GO:0004818 |
| mevalonate kinase activity | 0.003894905 | GO:0004496 |
| glutamine-tRNA ligase activity | 0.003894905 | GO:0004819 |
| Carbon metabolism | 0.005200136 | KEGG pathway |
| Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) | 0.005308548 | kinase family |
| glycine hydroxymethyltransferase activity | 0.006230466 | GO:0004372 |
| ATP binding | 0.006955919 | GO:0005524 |
| phosphopyruvate hydratase complex | 0.009654255 | GO:0000015 |
| glutaminyl-tRNA aminoacylation | 0.012106881 | GO:0006425 |
| glutamyl-tRNA aminoacylation | 0.012106881 | GO:0006424 |
| response to nitrate | 0.013445134 | GO:0010167 |
| L-serine metabolic process | 0.013445134 | GO:0006563 |
| glycine metabolic process | 0.013445134 | GO:0006544 |
| tetrahydrofolate interconversion | 0.013445134 | GO:0035999 |
| Porphyrin and chlorophyll metabolism | 0.01684199 | KEGG pathway |
| Terpenoid backbone biosynthesis | 0.01684199 | KEGG pathway |
| trichome morphogenesis | 0.019146579 | GO:0010090 |
| isoprenoid biosynthetic process | 0.019146579 | GO:0008299 |
| folate polyglutamylation | 0.019547565 | plantCyc |
| glycine biosynthesis | 0.019547565 | plantCyc |
| mevalonate pathway I | 0.019547565 | plantCyc |
| folate transformations II | 0.022534894 | plantCyc |
| photorespiration | 0.022534894 | plantCyc |
| Rubisco shunt | 0.025522569 | plantCyc |
| gluconeogenesis I | 0.02648625 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.02648625 | plantCyc |
| glycolysis IV (plant cytosol) | 0.02648625 | plantCyc |
| root development | 0.027080647 | GO:0048364 |
| response to cytokinin | 0.027080647 | GO:0009735 |
| glycolytic process | 0.027080647 | GO:0006096 |
| protein autophosphorylation | 0.032845798 | GO:0046777 |
| cytosol | 0.039444351 | GO:0005829 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008366 | AT5G27450 (3.00E-124) | MK|mevalonate kinase |
| CRO_T008480 | AT1G74030 (0) | ENO1|enolase 1 |
| CRO_T016686 | AT1G09900 (4.00E-30) | Pentatricopeptide repeat (PPR-like) superfamily protein |
| CRO_T019800 | AT4G37930 (0) | SHM1|serine transhydroxymethyltransferase 1; SHMT1|SERINE HYDROXYMETHYLTRANSFERASE 1; STM|SERINE TRANSHYDROXYMETHYLTRANSFERASE |
| CRO_T020164 | - | - |
| CRO_T031843 | AT5G26710 (0) | Glutamyl/glutaminyl-tRNA synthetase, class Ic |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000594 | Transcription_related, Transcription factor: NF-YB Transcription_related, Transcription factor: zf-HD mevalonate kinase activity response to zinc ion cation transport regulation of sequestering of zinc ion Antigen processing and presentation Sphingolipid metabolism isoprenoid biosynthetic process ceramide degradation Terpenoid backbone biosynthesis mevalonate pathway I gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt zinc ion transmembrane transporter activity | details |
| TreatCFM000596 | Tight junction mevalonate kinase activity ATP binding Sphingolipid metabolism cation transport regulation of sequestering of zinc ion response to zinc ion zinc ion transmembrane transporter activity non-membrane spanning protein tyrosine kinase activity isoprenoid biosynthetic process ceramide degradation Terpenoid backbone biosynthesis mevalonate pathway I gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt peptidyl-tyrosine phosphorylation | details |
| TreatCFM000842 | ferric iron binding ferroxidase activity FAD diphosphatase activity anaerobic respiration flavin-containing compound metabolic process peptidyl-cysteine oxidation detection of hypoxia MAPK signaling pathway - fly Taurine and hypotaurine metabolism oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen response to hydrogen peroxide aerobic respiration iron-sulfur cluster assembly Porphyrin and chlorophyll metabolism Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001482 | Transcription_related, Transcription factor: Alfin-like mevalonate pathway I pyridoxal 5'-phosphate salvage I FAD diphosphatase activity pyridoxal kinase activity mevalonate kinase activity flavin-containing compound metabolic process peptidyl-cysteine oxidation anaerobic respiration pyridoxal 5'-phosphate salvage detection of hypoxia Taurine and hypotaurine metabolism Vitamin B6 metabolism phosphorylation zinc ion binding isoprenoid biosynthetic process | details |
| TreatCFM001592 | S-methyl-5'-thioadenosine degradation I S-methyl-5'-thioadenosine degradation II blue light photoreceptor activity mevalonate kinase activity blue light signaling pathway entrainment of circadian clock shade avoidance positive regulation of abscisic acid-activated signaling pathway regulation of stomatal closure anthocyanin-containing compound metabolic process programmed cell death phosphatidic acid metabolic process choline biosynthesis III mevalonate pathway I photoperiodism, flowering phospholipase D activity regulation of stomatal movement nucleoside metabolic process nuclear body Transcription_related, Transcription factor: G2-like phosphatidate metabolism, as a signaling molecule positive regulation of proteasomal ubiquitin-dependent protein catabolic process photomorphogenesis response to cold isoprenoid biosynthetic process phospholipases Circadian rhythm - plant Cysteine and methionine metabolism Glycerophospholipid metabolism Terpenoid backbone biosynthesis response to water deprivation Ubiquitin mediated proteolysis identical protein binding | details |
| TreatCFM001837 | mevalonate pathway I mevalonate kinase activity regulation of sequestering of zinc ion cation transport response to zinc ion Terpenoid backbone biosynthesis isoprenoid biosynthetic process zinc ion transmembrane transporter activity | details |
Expression profiles
 Show details about module gene expression profiling |