TreatCFM000596's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Tight junction | 0.003900421 | KEGG pathway |
| mevalonate kinase activity | 0.004048762 | GO:0004496 |
| ATP binding | 0.00813393 | GO:0005524 |
| Sphingolipid metabolism | 0.009253238 | KEGG pathway |
| cation transport | 0.009649976 | GO:0006812 |
| regulation of sequestering of zinc ion | 0.009649976 | GO:0061088 |
| response to zinc ion | 0.009649976 | GO:0010043 |
| zinc ion transmembrane transporter activity | 0.015151481 | GO:0005385 |
| non-membrane spanning protein tyrosine kinase activity | 0.015151481 | GO:0004715 |
| isoprenoid biosynthetic process | 0.015267843 | GO:0008299 |
| ceramide degradation | 0.015634831 | plantCyc |
| Terpenoid backbone biosynthesis | 0.01684199 | KEGG pathway |
| mevalonate pathway I | 0.016928975 | plantCyc |
| gluconeogenesis I | 0.022938155 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.022938155 | plantCyc |
| glycolysis IV (plant cytosol) | 0.022938155 | plantCyc |
| Rubisco shunt | 0.022938155 | plantCyc |
| peptidyl-tyrosine phosphorylation | 0.02759386 | GO:0018108 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002777 | - | - |
| CRO_T005306 | AT1G07380 (0) | Neutral/alkaline non-lysosomal ceramidase |
| CRO_T008366 | AT5G27450 (3.00E-124) | MK|mevalonate kinase |
| CRO_T016808 | AT5G38380 (6.00E-39) | |
| CRO_T019545 | AT5G01015 (6.00E-16) | unknown protein |
| CRO_T025714 | AT1G11660 (0) | heat shock protein 70 (Hsp 70) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000594 | Transcription_related, Transcription factor: NF-YB Transcription_related, Transcription factor: zf-HD mevalonate kinase activity response to zinc ion cation transport regulation of sequestering of zinc ion Antigen processing and presentation Sphingolipid metabolism isoprenoid biosynthetic process ceramide degradation Terpenoid backbone biosynthesis mevalonate pathway I gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt zinc ion transmembrane transporter activity | details |
| TreatCFM000595 | S-methyl-5'-thioadenosine degradation I S-methyl-5'-thioadenosine degradation II Transcription_related, Transcription factor: NF-YB Transcription_related, Transcription factor: zf-HD pyrimidine nucleobase metabolic process nucleoside metabolic process pyrimidine nucleoside salvage photorespiration chloroplast part Antigen processing and presentation Cysteine and methionine metabolism uridine kinase activity | details |
| TreatCFM000916 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: zf-HD 2-phytyl-1,4-naphthoquinone methyltransferase activity cation transport regulation of sequestering of zinc ion response to zinc ion phylloquinone biosynthetic process ceramide degradation phylloquinol biosynthesis Glycosaminoglycan degradation Sphingolipid metabolism Ubiquinone and other terpenoid-quinone biosynthesis zinc ion transmembrane transporter activity gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt S-adenosylmethionine-dependent methyltransferase activity | details |
| TreatCFM000949 | phosphopyruvate hydratase activity glutamate-tRNA ligase activity mevalonate kinase activity glutamine-tRNA ligase activity Carbon metabolism Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) glycine hydroxymethyltransferase activity ATP binding phosphopyruvate hydratase complex glutaminyl-tRNA aminoacylation glutamyl-tRNA aminoacylation response to nitrate L-serine metabolic process glycine metabolic process tetrahydrofolate interconversion Porphyrin and chlorophyll metabolism Terpenoid backbone biosynthesis trichome morphogenesis isoprenoid biosynthetic process folate polyglutamylation glycine biosynthesis mevalonate pathway I folate transformations II photorespiration Rubisco shunt gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) root development response to cytokinin glycolytic process protein autophosphorylation cytosol | details |
| TreatCFM001482 | Transcription_related, Transcription factor: Alfin-like mevalonate pathway I pyridoxal 5'-phosphate salvage I FAD diphosphatase activity pyridoxal kinase activity mevalonate kinase activity flavin-containing compound metabolic process peptidyl-cysteine oxidation anaerobic respiration pyridoxal 5'-phosphate salvage detection of hypoxia Taurine and hypotaurine metabolism Vitamin B6 metabolism phosphorylation zinc ion binding isoprenoid biosynthetic process | details |
| TreatCFM001592 | S-methyl-5'-thioadenosine degradation I S-methyl-5'-thioadenosine degradation II blue light photoreceptor activity mevalonate kinase activity blue light signaling pathway entrainment of circadian clock shade avoidance positive regulation of abscisic acid-activated signaling pathway regulation of stomatal closure anthocyanin-containing compound metabolic process programmed cell death phosphatidic acid metabolic process choline biosynthesis III mevalonate pathway I photoperiodism, flowering phospholipase D activity regulation of stomatal movement nucleoside metabolic process nuclear body Transcription_related, Transcription factor: G2-like phosphatidate metabolism, as a signaling molecule positive regulation of proteasomal ubiquitin-dependent protein catabolic process photomorphogenesis response to cold isoprenoid biosynthetic process phospholipases Circadian rhythm - plant Cysteine and methionine metabolism Glycerophospholipid metabolism Terpenoid backbone biosynthesis response to water deprivation Ubiquitin mediated proteolysis identical protein binding | details |
| TreatCFM001837 | mevalonate pathway I mevalonate kinase activity regulation of sequestering of zinc ion cation transport response to zinc ion Terpenoid backbone biosynthesis isoprenoid biosynthetic process zinc ion transmembrane transporter activity | details |
| TreatCFM001975 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Glycosaminoglycan degradation geraniol kinase activity organic cyclic compound metabolic process long-chain fatty acid biosynthetic process CTP:2-trans,-6-trans-farnesol kinase activity response to molecule of fungal origin geranylgeraniol kinase activity small molecule metabolic process tocopherol cyclase activity farnesol metabolic process adenyl-nucleotide exchange factor activity sphingosine N-acyltransferase activity heterocycle metabolic process carpel development cellular lipid metabolic process Sphingolipid metabolism ceramide degradation farnesylcysteine salvage pathway vitamin E biosynthesis (tocopherols) chaperone binding Ubiquinone and other terpenoid-quinone biosynthesis Terpenoid backbone biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt isomerase activity nucleotidyltransferase activity regulation of catalytic activity | details |
Expression profiles
 Show details about module gene expression profiling |