TreatCFM000995's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-tyrosine:2-oxoglutarate aminotransferase activity | 0.011565349 | GO:0004838 |
| L-phenylalanine biosynthesis III (cytosolic, plants) | 0.011694348 | plantCyc |
| phosphatidylcholine acyl editing | 0.014905288 | plantCyc |
| phospholipases | 0.014905288 | plantCyc |
| O-acyltransferase activity | 0.016693165 | GO:0008374 |
| L-phenylalanine:2-oxoglutarate aminotransferase activity | 0.016693165 | GO:0080130 |
| response to cold | 0.027943645 | GO:0009409 |
| response to wounding | 0.027943645 | GO:0009611 |
| response to osmotic stress | 0.027943645 | GO:0006970 |
| cellular amino acid metabolic process | 0.027943645 | GO:0006520 |
| response to ethylene | 0.036441486 | GO:0009723 |
| response to water deprivation | 0.037205927 | GO:0009414 |
| biosynthetic process | 0.03774589 | GO:0009058 |
| Transcription_related, Transcription factor: bZIP | 0.038900601 | TF family |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.041797958 | GO:0043161 |
| Biosynthesis of amino acids | 0.049664992 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008453 | AT3G43850 (3.00E-21) | unknown protein |
| CRO_T010438 | AT5G53970 (6.00E-131) | TAT7|tyrosine aminotransferase 7 |
| CRO_T018401 | AT2G35530 (1.00E-57) | bZIP16|basic region/leucine zipper transcription factor 16 |
| CRO_T024298 | AT1G16860 (0) | Ubiquitin-specific protease family C19-related protein |
| CRO_T026689 | AT3G03310 (3.00E-174) | ATLCAT3|ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3; LCAT3|lecithin:cholesterol acyltransferase 3 |
| CRO_T032480 | AT4G03510 (2.00E-41) | RMA1|RING membrane-anchor 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000155 | dTTP biosynthetic process dTDP biosynthetic process dUDP biosynthetic process positive regulation of autophagy response to extracellular stimulus thymidylate kinase activity organ morphogenesis pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pyrimidine deoxyribonucleotides de novo biosynthesis I regulation of root development lateral root development reactive oxygen species metabolic process endoplasmic reticulum unfolded protein response fruit development RNA biosynthetic process defense response to fungus, incompatible interaction uridylate kinase activity endoplasmic reticulum heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway Cul4-RING E3 ubiquitin ligase complex Transcription_related, Transcription factor: AP2 Transcription_related, Transcription regulator: mTERF histone acetyltransferase activity histone acetylation Pyrimidine metabolism Ras signaling pathway jasmonic acid mediated signaling pathway response to ethylene phosphoprotein phosphatase activity DNA-directed RNA polymerase activity | details |
| TreatCFM000950 | Transcription_related, Transcription factor: Trihelix UMP kinase activity L-tyrosine:2-oxoglutarate aminotransferase activity Transcription_related, Transcription factor: BBR-BPC hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: PLATZ L-phenylalanine biosynthesis III (cytosolic, plants) UTP and CTP de novo biosynthesis L-phenylalanine:2-oxoglutarate aminotransferase activity cellular amino acid metabolic process pyrimidine nucleotide biosynthetic process nucleotide phosphorylation beta-galactosidase activity pyrimidine ribonucleotides interconversion Biosynthesis of amino acids biosynthetic process | details |
| TreatCFM000951 | UMP kinase activity L-tyrosine:2-oxoglutarate aminotransferase activity Transcription_related, Transcription factor: BBR-BPC L-phenylalanine biosynthesis III (cytosolic, plants) UTP and CTP de novo biosynthesis hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: Trihelix pyrimidine nucleotide biosynthetic process mature ribosome assembly pyrimidine ribonucleotides interconversion nucleotide phosphorylation cellular amino acid metabolic process L-phenylalanine:2-oxoglutarate aminotransferase activity beta-galactosidase activity translational elongation biosynthetic process Biosynthesis of amino acids Ribosome biogenesis in eukaryotes translation elongation factor activity | details |
| TreatCFM000996 | biosynthetic process protein binding thiosulfate disproportionation IV (rhodanese) L-tyrosine:2-oxoglutarate aminotransferase activity L-phenylalanine biosynthesis III (cytosolic, plants) formation of glycosidic bonds, GlycosylTransferases: GTnc strictosidine synthase activity O-acyltransferase activity L-phenylalanine:2-oxoglutarate aminotransferase activity cellular amino acid metabolic process response to osmotic stress response to wounding trehalose biosynthetic process response to cold phosphatidylcholine acyl editing phospholipases secologanin and strictosidine biosynthesis response to ethylene Transcription_related, Transcription factor: bZIP response to water deprivation proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM001180 | Transcription_related, Transcription factor: Trihelix UMP kinase activity L-tyrosine:2-oxoglutarate aminotransferase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc L-phenylalanine biosynthesis III (cytosolic, plants) UTP and CTP de novo biosynthesis xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc pyrimidine nucleotide biosynthetic process nucleotide phosphorylation cellular amino acid metabolic process L-phenylalanine:2-oxoglutarate aminotransferase activity beta-galactosidase activity pyrimidine ribonucleotides interconversion Biosynthesis of amino acids biosynthetic process | details |
Expression profiles
 Show details about module gene expression profiling |