TreatCFM001056's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| CTP biosynthetic process | 0.002605998 | GO:0006241 |
| tRNA 3'-trailer cleavage, endonucleolytic | 0.002605998 | GO:0034414 |
| UTP biosynthetic process | 0.002605998 | GO:0006228 |
| nucleoside diphosphate phosphorylation | 0.002605998 | GO:0006165 |
| GTP biosynthetic process | 0.002605998 | GO:0006183 |
| nucleoside diphosphate kinase activity | 0.003693308 | GO:0004550 |
| 3'-tRNA processing endoribonuclease activity | 0.003693308 | GO:0042781 |
| Transcription_related, Transcription factor: MYB-related | 0.007072836 | TF family |
| adenosine deoxyribonucleotides de novo biosynthesis | 0.009563907 | plantCyc |
| CMP phosphorylation | 0.009563907 | plantCyc |
| guanosine deoxyribonucleotides de novo biosynthesis I | 0.009563907 | plantCyc |
| guanosine ribonucleotides de novo biosynthesis | 0.009563907 | plantCyc |
| purine deoxyribonucleosides salvage | 0.009563907 | plantCyc |
| pyrimidine deoxyribonucleotide phosphorylation | 0.009563907 | plantCyc |
| pyrimidine deoxyribonucleotides de novo biosynthesis II | 0.009563907 | plantCyc |
| superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) | 0.009563907 | plantCyc |
| UTP and CTP de novo biosynthesis | 0.010460759 | plantCyc |
| pyrimidine deoxyribonucleotides de novo biosynthesis I | 0.011177458 | plantCyc |
| proteasome complex | 0.016560873 | GO:0000502 |
| pyrimidine ribonucleotides interconversion | 0.023488067 | plantCyc |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.024662048 | GO:0043161 |
| Proteasome | 0.044715865 | KEGG pathway |
| Purine metabolism | 0.049186045 | KEGG pathway |
| RNA transport | 0.049186045 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002747 | AT1G01520 (9.00E-21) | ASG4|ALTERED SEED GERMINATION 4 |
| CRO_T007884 | - | - |
| CRO_T016016 | AT4G24820 (0) | 26S proteasome, regulatory subunit Rpn7; Proteasome component (PCI) domain |
| CRO_T029260 | AT1G17410 (1.00E-13) | Nucleoside diphosphate kinase family protein |
| CRO_T032405 | AT1G74700 (6.00E-111) | TRZ1|tRNAse Z1 |
| CRO_T032733 | AT5G60070 (6.00E-45) | ankyrin repeat family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001971 | Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family ErbB signaling pathway Linoleic acid metabolism UTP biosynthetic process nucleoside diphosphate phosphorylation GTP biosynthetic process CTP biosynthetic process oxylipin biosynthetic process ATP binding nucleoside diphosphate kinase activity 9-lipoxygenase and 9-allene oxide synthase pathway adenosine deoxyribonucleotides de novo biosynthesis CMP phosphorylation guanosine deoxyribonucleotides de novo biosynthesis I guanosine ribonucleotides de novo biosynthesis purine deoxyribonucleosides salvage pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II pyrimidine ribonucleosides salvage I superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) UTP and CTP de novo biosynthesis pyrimidine deoxyribonucleotides de novo biosynthesis I oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen traumatin and (Z)-3-hexen-1-yl acetate biosynthesis metal ion binding jasmonic acid biosynthesis pyrimidine ribonucleotides interconversion cytosol protein autophosphorylation fatty acid biosynthetic process response to abscisic acid Purine metabolism | details |
| TreatCFM002049 | UDP-α-D-glucuronate biosynthesis (from myo-inositol) formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: MYB-related phosphotransferase activity, alcohol group as acceptor Pentose and glucuronate interconversions small GTPase mediated signal transduction | details |
| TreatCFM002073 | RNA polymerase II core binding protochlorophyllide reductase activity Proteasome Transcription_related, Transcription factor: ERF very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II thylakoid membrane organization regulation of histone H3-K4 methylation negative regulation of flower development histone methylation Cdc73/Paf1 complex proteasome complex chloroplast inner membrane chloroplast organization positive regulation of transcription, DNA-templated rRNA processing proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM002109 | 3'-tRNA processing endoribonuclease activity tRNA 3'-trailer cleavage, endonucleolytic deoxyribonucleoside diphosphate metabolic process RNA splicing, via transesterification reactions proteasome regulatory particle, lid subcomplex proteasome assembly deoxyribonucleotide biosynthetic process regulation of cell cycle ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor ribonucleoside-diphosphate reductase complex structural molecule activity regulation of flower development Transcription_related, Transcription factor: MYB multicellular organism development ubiquitin-dependent protein catabolic process Proteasome Purine metabolism RNA transport | details |
| TreatCFM002146 | Proteasome protochlorophyllide reductase activity transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly Basal transcription factors phytosphingosine metabolic process proteasome complex proteasome core complex, alpha-subunit complex 1,3-beta-D-glucan synthase complex transcription factor TFIID complex Transcription_related, Transcription factor: ERF transcription regulatory region DNA binding threonine-type endopeptidase activity 1,3-beta-D-glucan synthase activity 1,3-β-D-glucan biosynthesis phosphatidate metabolism, as a signaling molecule positive regulation of transcription from RNA polymerase II promoter (1->3)-beta-D-glucan biosynthetic process macromolecule metabolic process response to cold very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II chromatin binding primary metabolic process | details |
| TreatCFM002157 | 3'-tRNA processing endoribonuclease activity ribonucleoside-diphosphate reductase complex deoxyribonucleoside diphosphate metabolic process tRNA 3'-trailer cleavage, endonucleolytic deoxyribonucleotide biosynthetic process regulation of cell cycle ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor ethylene biosynthesis I (plants) Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) leucodelphinidin biosynthesis pinobanksin biosynthesis multicellular organism development Purine metabolism RNA transport formation of glycosidic bonds, GlycosylTransferases: GTnc oxidation-reduction process | details |
| TreatCFM002168 | protein targeting to membrane 5-formyltetrahydrofolate transport methotrexate transport folic acid transport tRNA 3'-trailer cleavage, endonucleolytic methotrexate transporter activity 3'-tRNA processing endoribonuclease activity 5-formyltetrahydrofolate transporter activity vesicle docking vesicle fusion Transcription_related, Transcription factor: B3 Transcription_related, Transcription factor: MYB-related Transcription_related, Transcription factor: bHLH SNARE binding SNAP receptor activity | details |
Expression profiles
 Show details about module gene expression profiling |