TreatCFM002049's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| UDP-α-D-glucuronate biosynthesis (from myo-inositol) | 0.001240768 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.006378735 | cazy family |
| Transcription_related, Transcription factor: MYB-related | 0.010609255 | TF family |
| phosphotransferase activity, alcohol group as acceptor | 0.01624335 | GO:0016773 |
| Pentose and glucuronate interconversions | 0.016904734 | KEGG pathway |
| small GTPase mediated signal transduction | 0.035470184 | GO:0007264 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001520 | AT1G26110 (5.00E-39) | DCP5|decapping 5 |
| CRO_T002522 | AT1G43890 (2.00E-97) | ATRAB-C1|ARABIDOPSIS RAB GTPASE HOMOLOG C1; ATRAB18|ARABIDOPSIS RAB GTPASE HOMOLOG B18; RAB18|RAB GTPASE HOMOLOG B18; RAB18-1|RAB GTPASE HOMOLOG 18-1; RABC1|RAB GTPASE HOMOLOG C1 |
| CRO_T002747 | AT1G01520 (9.00E-21) | ASG4|ALTERED SEED GERMINATION 4 |
| CRO_T012349 | AT2G02061 (1.00E-102) | Nucleotide-diphospho-sugar transferase family protein |
| CRO_T017935 | - | - |
| CRO_T020393 | AT3G01640 (1.00E-155) | ATGLCAK|GLUCURONOKINASE; GLCAK|glucuronokinase G |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001056 | CTP biosynthetic process tRNA 3'-trailer cleavage, endonucleolytic UTP biosynthetic process nucleoside diphosphate phosphorylation GTP biosynthetic process nucleoside diphosphate kinase activity 3'-tRNA processing endoribonuclease activity Transcription_related, Transcription factor: MYB-related adenosine deoxyribonucleotides de novo biosynthesis CMP phosphorylation guanosine deoxyribonucleotides de novo biosynthesis I guanosine ribonucleotides de novo biosynthesis purine deoxyribonucleosides salvage pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) UTP and CTP de novo biosynthesis pyrimidine deoxyribonucleotides de novo biosynthesis I proteasome complex pyrimidine ribonucleotides interconversion proteasome-mediated ubiquitin-dependent protein catabolic process Proteasome Purine metabolism RNA transport | details |
| TreatCFM001480 | nuclear nucleosome DNA replication factor C complex Transcription_related, Transcription factor: SBP DNA biosynthetic process nucleosome assembly DNA-dependent DNA replication Fanconi anemia pathway Viral carcinogenesis DNA replication DNA clamp loader activity DNA-directed DNA polymerase activity protein heterodimerization activity | details |
| TreatCFM001725 | Influenza A tRNA wobble position uridine thiolation sulfurtransferase activity L-alanine biosynthesis III transcription corepressor activity molybdenum cofactor biosynthesis small GTPase mediated signal transduction methyltransferase activity | details |
| TreatCFM001735 | Cytochrome_P450, Cytochrome P450: CYP701A GA12 biosynthesis ent-kaur-16-en-19-ol oxidase activity ent-kaurene oxidase activity ent-kaur-16-en-19-al oxidase activity ent-kaurene oxidation to kaurenoic acid nucleotide-sugar transport gibberellin biosynthetic process cinnamoyl-CoA reductase activity cation binding Diterpenoid biosynthesis chloroplast outer membrane Transcription_related, Transcription factor: bHLH single-organism cellular process MAPK signaling pathway - plant coenzyme binding phosphoprotein phosphatase activity | details |
| TreatCFM002168 | protein targeting to membrane 5-formyltetrahydrofolate transport methotrexate transport folic acid transport tRNA 3'-trailer cleavage, endonucleolytic methotrexate transporter activity 3'-tRNA processing endoribonuclease activity 5-formyltetrahydrofolate transporter activity vesicle docking vesicle fusion Transcription_related, Transcription factor: B3 Transcription_related, Transcription factor: MYB-related Transcription_related, Transcription factor: bHLH SNARE binding SNAP receptor activity | details |
Expression profiles
 Show details about module gene expression profiling |