TreatCFM001062's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| vinorine synthase activity | 0.006771466 | GO:0050636 |
| isochorismate synthase activity | 0.006771466 | GO:0008909 |
| Protein_kinases_phosphatases, PPC:1.5.2: LRK10 Like Kinase (Type 1) | 0.006824224 | kinase family |
| salicylate biosynthesis I | 0.007819149 | plantCyc |
| ATG1/ULK1 kinase complex | 0.010119663 | GO:1990316 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.015084009 | cazy family |
| 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) | 0.016487588 | plantCyc |
| mannitol degradation II | 0.016487588 | plantCyc |
| Autophagy - animal | 0.017025301 | KEGG pathway |
| Ubiquinone and other terpenoid-quinone biosynthesis | 0.017025301 | KEGG pathway |
| cation binding | 0.019547565 | GO:0043169 |
| ajmaline and sarpagine biosynthesis | 0.020806433 | plantCyc |
| secologanin and strictosidine biosynthesis | 0.027525786 | plantCyc |
| cell surface receptor signaling pathway | 0.028556855 | GO:0007166 |
| autophagy | 0.028556855 | GO:0006914 |
| alkaloid metabolic process | 0.028556855 | GO:0009820 |
| Phenylpropanoid biosynthesis | 0.029397493 | KEGG pathway |
| single-organism cellular process | 0.042296796 | GO:0044763 |
| biosynthetic process | 0.042296796 | GO:0009058 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006068 | AT4G37990 (2.00E-98) | ATCAD8|CINNAMYL-ALCOHOL DEHYDROGENASE 8; CAD-B2|CINNAMYL-ALCOHOL DEHYDROGENASE B2; ELI3|ELICITOR-ACTIVATED GENE 3; ELI3-2|elicitor-activated gene 3-2 |
| CRO_T012995 | AT4G31750 (2.00E-45) | WIN2|HOPW1-1-interacting 2 |
| CRO_T016518 | AT5G47950 (2.00E-51) | HXXXD-type acyl-transferase family protein |
| CRO_T016842 | AT1G69910 (5.00E-177) | Protein kinase superfamily protein |
| CRO_T018124 | AT1G68890 (8.00E-17) | PHYLLO|PHYLLO |
| CRO_T019611 | AT3G18770 (1.00E-93) | Autophagy-related protein 13 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000757 | Transcription_related, Transcription regulator: SNF2 Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) leucodelphinidin biosynthesis pinobanksin biosynthesis response to fungus response to bacterium integral component of plasma membrane isoprenoid biosynthetic process glucose import single-organism cellular process glucose transmembrane transport proton transport cation binding glucose transmembrane transporter activity sugar:proton symporter activity protein serine/threonine phosphatase activity protein dephosphorylation | details |
| TreatCFM002101 | CMP-3-deoxy-D-manno-octulosonate biosynthesis RNA degradation Lipopolysaccharide biosynthesis fruit development organ morphogenesis reactive oxygen species metabolic process endoplasmic reticulum unfolded protein response lateral root development regulation of root development response to extracellular stimulus defense response to fungus, incompatible interaction 3-deoxy-8-phosphooctulonate synthase activity Autophagy - animal Ras signaling pathway Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 ATG1/ULK1 kinase complex heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway autophagy histone acetylation ATP binding large ribosomal subunit rRNA binding Cul4-RING E3 ubiquitin ligase complex histone acetyltransferase activity Transcription_related, Transcription regulator: mTERF jasmonic acid mediated signaling pathway response to ethylene poly(A) RNA binding biosynthetic process RNA processing | details |
| TreatCFM002144 | glutaminyl-tRNAgln biosynthesis via transamidation ATG1/ULK1 kinase complex heterotrimeric G-protein complex glutamyl-tRNA(Gln) amidotransferase complex lateral root development glutaminyl-tRNAGln biosynthesis via transamidation response to extracellular stimulus regulation of root development organ morphogenesis reactive oxygen species metabolic process glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity endoplasmic reticulum unfolded protein response fruit development defense response to fungus, incompatible interaction mitochondrial translation negative regulation of abscisic acid-activated signaling pathway Cul4-RING E3 ubiquitin ligase complex autophagy histone acetylation Transcription_related, Transcription regulator: mTERF Autophagy - animal Ras signaling pathway histone acetyltransferase activity jasmonic acid mediated signaling pathway response to ethylene exocyst exocytosis Aminoacyl-tRNA biosynthesis RNA degradation helicase activity | details |
Expression profiles
 Show details about module gene expression profiling |