TreatCFM002144's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| glutaminyl-tRNAgln biosynthesis via transamidation | 0.001063594 | plantCyc |
| ATG1/ULK1 kinase complex | 0.00752274 | GO:1990316 |
| heterotrimeric G-protein complex | 0.00752274 | GO:0005834 |
| glutamyl-tRNA(Gln) amidotransferase complex | 0.00752274 | GO:0030956 |
| lateral root development | 0.007991086 | GO:0048527 |
| glutaminyl-tRNAGln biosynthesis via transamidation | 0.007991086 | GO:0070681 |
| response to extracellular stimulus | 0.007991086 | GO:0009991 |
| regulation of root development | 0.007991086 | GO:2000280 |
| organ morphogenesis | 0.007991086 | GO:0009887 |
| reactive oxygen species metabolic process | 0.007991086 | GO:0072593 |
| glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 0.008096328 | GO:0050567 |
| endoplasmic reticulum unfolded protein response | 0.0083894 | GO:0030968 |
| fruit development | 0.0083894 | GO:0010154 |
| defense response to fungus, incompatible interaction | 0.008521936 | GO:0009817 |
| mitochondrial translation | 0.009585761 | GO:0032543 |
| negative regulation of abscisic acid-activated signaling pathway | 0.012196454 | GO:0009788 |
| Cul4-RING E3 ubiquitin ligase complex | 0.012407019 | GO:0080008 |
| autophagy | 0.01277535 | GO:0006914 |
| histone acetylation | 0.014000645 | GO:0016573 |
| Transcription_related, Transcription regulator: mTERF | 0.015925644 | TF family |
| Autophagy - animal | 0.016966634 | KEGG pathway |
| Ras signaling pathway | 0.016966634 | KEGG pathway |
| histone acetyltransferase activity | 0.017188179 | GO:0004402 |
| jasmonic acid mediated signaling pathway | 0.017781094 | GO:0009867 |
| response to ethylene | 0.019779858 | GO:0009723 |
| exocyst | 0.021635096 | GO:0000145 |
| exocytosis | 0.023315282 | GO:0006887 |
| Aminoacyl-tRNA biosynthesis | 0.027191509 | KEGG pathway |
| RNA degradation | 0.027191509 | KEGG pathway |
| helicase activity | 0.035629561 | GO:0004386 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T009098 | AT2G36000 (2.00E-21) | EMB3114|EMBRYO DEFECTIVE 3114 |
| CRO_T017761 | AT1G48520 (1.00E-79) | GATB|GLU-ADT subunit B |
| CRO_T018900 | AT2G30800 (1.00E-23) | HVT1|helicase in vascular tissue and tapetum |
| CRO_T019611 | AT3G18770 (1.00E-93) | Autophagy-related protein 13 |
| CRO_T021871 | AT1G28220 (3.00E-87) | ATPUP3|purine permease 3 |
| CRO_T022274 | AT1G07000 (0) | ATEXO70B2|exocyst subunit exo70 family protein B2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000122 | 3-hydroxyisobutyryl-CoA hydrolase activity L-valine degradation I histone acetyltransferase activity heterotrimeric G-protein complex Cul4-RING E3 ubiquitin ligase complex organ morphogenesis regulation of root development lateral root development fruit development defense response to fungus, incompatible interaction response to extracellular stimulus endoplasmic reticulum unfolded protein response reactive oxygen species metabolic process negative regulation of abscisic acid-activated signaling pathway Ras signaling pathway histone acetylation jasmonic acid mediated signaling pathway Transcription_related, Transcription regulator: mTERF response to ethylene | details |
| TreatCFM000155 | dTTP biosynthetic process dTDP biosynthetic process dUDP biosynthetic process positive regulation of autophagy response to extracellular stimulus thymidylate kinase activity organ morphogenesis pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pyrimidine deoxyribonucleotides de novo biosynthesis I regulation of root development lateral root development reactive oxygen species metabolic process endoplasmic reticulum unfolded protein response fruit development RNA biosynthetic process defense response to fungus, incompatible interaction uridylate kinase activity endoplasmic reticulum heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway Cul4-RING E3 ubiquitin ligase complex Transcription_related, Transcription factor: AP2 Transcription_related, Transcription regulator: mTERF histone acetyltransferase activity histone acetylation Pyrimidine metabolism Ras signaling pathway jasmonic acid mediated signaling pathway response to ethylene phosphoprotein phosphatase activity DNA-directed RNA polymerase activity | details |
| TreatCFM000660 | glutaminyl-tRNAgln biosynthesis via transamidation DNA unwinding involved in DNA replication DNA topological change chromosome segregation glutaminyl-tRNAGln biosynthesis via transamidation mitotic sister chromatid cohesion vacuolar acidification mitochondrial translation Transcription_related, Transcription factor: C3H cohesin core heterodimer glutamyl-tRNA(Gln) amidotransferase complex DNA topoisomerase complex (ATP-hydrolyzing) nucleoid vacuolar proton-transporting V-type ATPase, V0 domain myosin complex ATP hydrolysis coupled proton transport DNA topoisomerase type II (ATP-hydrolyzing) activity glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity cell part mitochondrion mediator complex chromosome chloroplast motor activity Aminoacyl-tRNA biosynthesis Cell cycle DNA repair | details |
| TreatCFM001062 | vinorine synthase activity isochorismate synthase activity Protein_kinases_phosphatases, PPC:1.5.2: LRK10 Like Kinase (Type 1) salicylate biosynthesis I ATG1/ULK1 kinase complex adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) mannitol degradation II Autophagy - animal Ubiquinone and other terpenoid-quinone biosynthesis cation binding ajmaline and sarpagine biosynthesis secologanin and strictosidine biosynthesis cell surface receptor signaling pathway autophagy alkaloid metabolic process Phenylpropanoid biosynthesis single-organism cellular process biosynthetic process | details |
| TreatCFM001155 | regulation of root development response to extracellular stimulus lateral root development organ morphogenesis fruit development defense response to fungus, incompatible interaction reactive oxygen species metabolic process endoplasmic reticulum unfolded protein response heterotrimeric G-protein complex Cul4-RING E3 ubiquitin ligase complex negative regulation of abscisic acid-activated signaling pathway histone acetylation histone acetyltransferase activity glucan endo-1,3-beta-D-glucosidase activity oxidized purine nucleobase lesion DNA N-glycosylase activity Ras signaling pathway jasmonic acid mediated signaling pathway damaged DNA binding response to ethylene adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: mTERF cytosolic small ribosomal subunit DNA repair small GTPase mediated signal transduction | details |
| TreatCFM001331 | 3-deoxy-8-phosphooctulonate synthase activity thymidylate kinase activity response to extracellular stimulus dUDP biosynthetic process dTTP biosynthetic process dTDP biosynthetic process organ morphogenesis regulation of root development reactive oxygen species metabolic process lateral root development CMP-3-deoxy-D-manno-octulosonate biosynthesis pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) fruit development endoplasmic reticulum unfolded protein response uridylate kinase activity defense response to fungus, incompatible interaction pyrimidine deoxyribonucleotides de novo biosynthesis I endoplasmic reticulum heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway histone acetyltransferase activity Cul4-RING E3 ubiquitin ligase complex histone acetylation Transcription_related, Transcription regulator: mTERF Lipopolysaccharide biosynthesis jasmonic acid mediated signaling pathway response to ethylene Ras signaling pathway Pyrimidine metabolism biosynthetic process helicase activity RNA degradation | details |
| TreatCFM001660 | glutaminyl-tRNAgln biosynthesis via transamidation glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity protein domain specific binding glutaminyl-tRNAGln biosynthesis via transamidation regulation of translation mitochondrial translation MAPK signaling pathway - yeast response to cold glutamyl-tRNA(Gln) amidotransferase complex response to heat pollen tube mitochondrion Aminoacyl-tRNA biosynthesis | details |
| TreatCFM001930 | response to extracellular stimulus lateral root development reactive oxygen species metabolic process organ morphogenesis endoplasmic reticulum unfolded protein response regulation of root development fruit development defense response to fungus, incompatible interaction leucopelargonidin and leucocyanidin biosynthesis negative regulation of abscisic acid-activated signaling pathway Ras signaling pathway histone acetylation Transcription_related, Transcription regulator: mTERF heterotrimeric G-protein complex jasmonic acid mediated signaling pathway Cul4-RING E3 ubiquitin ligase complex Phenylpropanoid biosynthesis response to ethylene RNA degradation exocytosis exocyst | details |
| TreatCFM001993 | glutaminyl-tRNAgln biosynthesis via transamidation mitochondrial RNA metabolic process glutaminyl-tRNAGln biosynthesis via transamidation glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity Transcription_related, Transcription regulator: SNF2 protein homooligomerization mitochondrial translation glutamyl-tRNA(Gln) amidotransferase complex alkaloid metabolic process RNA modification protein domain specific binding MAPK signaling pathway - yeast Aminoacyl-tRNA biosynthesis Homologous recombination small GTPase mediated signal transduction | details |
| TreatCFM002101 | CMP-3-deoxy-D-manno-octulosonate biosynthesis RNA degradation Lipopolysaccharide biosynthesis fruit development organ morphogenesis reactive oxygen species metabolic process endoplasmic reticulum unfolded protein response lateral root development regulation of root development response to extracellular stimulus defense response to fungus, incompatible interaction 3-deoxy-8-phosphooctulonate synthase activity Autophagy - animal Ras signaling pathway Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 ATG1/ULK1 kinase complex heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway autophagy histone acetylation ATP binding large ribosomal subunit rRNA binding Cul4-RING E3 ubiquitin ligase complex histone acetyltransferase activity Transcription_related, Transcription regulator: mTERF jasmonic acid mediated signaling pathway response to ethylene poly(A) RNA binding biosynthetic process RNA processing | details |
| TreatCFM002138 | glutaminyl-tRNAgln biosynthesis via transamidation lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) queuine tRNA-ribosyltransferase activity inositol-1,3,4-trisphosphate 6-kinase activity glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity inositol tetrakisphosphate 1-kinase activity inositol-1,3,4-trisphosphate 5-kinase activity inositol trisphosphate metabolic process glutaminyl-tRNAGln biosynthesis via transamidation queuosine biosynthetic process glutamyl-tRNA(Gln) amidotransferase complex mitochondrial translation 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) glucan endo-1,3-beta-D-glucosidase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Aminoacyl-tRNA biosynthesis Inositol phosphate metabolism RNA secondary structure unwinding Starch and sucrose metabolism cell redox homeostasis | details |
Expression profiles
 Show details about module gene expression profiling |