TreatCFM001082's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| voltage-gated ion channel activity | 0.001477651 | GO:0005244 |
| calcium channel activity | 0.001477651 | GO:0005262 |
| regulation of ion transmembrane transport | 0.006771466 | GO:0034765 |
| regulation of jasmonic acid biosynthetic process | 0.006771466 | GO:0080141 |
| calcium-mediated signaling | 0.010152697 | GO:0019722 |
| regulation of stomatal movement | 0.010152697 | GO:0010119 |
| plant-type vacuole | 0.011815964 | GO:0000325 |
| seed germination | 0.014278428 | GO:0009845 |
| calcium ion transmembrane transport | 0.014278428 | GO:0070588 |
| mRNA surveillance pathway | 0.014804758 | KEGG pathway |
| phosphoprotein phosphatase activity | 0.022094451 | GO:0004721 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.042670298 | cazy family |
| defense response | 0.04386362 | GO:0006952 |
| embryo development ending in seed dormancy | 0.04386362 | GO:0009793 |
| protein dephosphorylation | 0.04386362 | GO:0006470 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002903 | AT3G14470 (6.00E-117) | NB-ARC domain-containing disease resistance protein |
| CRO_T004564 | AT5G40520 (3.00E-07) | unknown protein |
| CRO_T010254 | AT2G42810 (2.00E-55) | AtPP5|protein phosphatase 5; PAPP5|Phytochrome-Associated Protein Phosphatase 5; PP5.2|protein phosphatase 5.2 |
| CRO_T011762 | AT4G03560 (4.00E-161) | ATCCH1|CALCIUM CHANNEL 1; ATTPC1|two-pore channel 1; FOU2|FATTY ACID OXYGENATION UPREGULATED 2 |
| CRO_T025343 | AT5G55840 (3.00E-34) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T026390 | AT5G36290 (7.00E-36) | Uncharacterized protein family (UPF0016) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001773 | negative regulation of cellular process ubiquinone-6 biosynthetic process membrane fusion Phenylpropanoid biosynthesis NADH dehydrogenase activity cinnamoyl-CoA reductase activity Basal transcription factors adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII SNAP receptor activity coenzyme binding | details |
| TreatCFM001922 | Protein_kinases_phosphatases, PPC:1.14.1: Crinkly 4 Like Kinase S-adenosylmethionine metabolic process S-adenosylhomocysteine metabolic process detoxification of reactive carbonyls in chloroplasts protein N-glycosylation (eukaryotic, high mannose) NF-kappa B signaling pathway N-Glycan biosynthesis | details |
| TreatCFM001992 | respiratory chain complex II nucleotide-excision repair factor 1 complex embryo development ending in seed dormancy nucleotide-excision repair, DNA incision, 5'-to lesion nucleotide-excision repair involved in interstrand cross-link repair Nucleotide excision repair tRNA wobble uridine modification resolution of meiotic recombination intermediates fructose 6-phosphate metabolic process glycolytic process through fructose-6-phosphate double-strand break repair via homologous recombination single-stranded DNA endodeoxyribonuclease activity diphosphate-fructose-6-phosphate 1-phosphotransferase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) glycolysis IV (plant cytosol) 6-phosphofructokinase activity oxidoreductase activity Glycolysis / Gluconeogenesis carbohydrate phosphorylation single-stranded DNA binding damaged DNA binding response to cytokinin isomerase activity FMN binding formation of glycosidic bonds, GlycosylTransferases: GTnc Photosynthesis | details |
| TreatCFM002004 | oxidation-reduction process ubiquinone-6 biosynthetic process alternative oxidase activity cinnamoyl-CoA reductase activity NADH dehydrogenase activity aerobic respiration III (alternative oxidase pathway) Phenylpropanoid biosynthesis coenzyme binding embryo development ending in seed dormancy protein ubiquitination | details |
Expression profiles
 Show details about module gene expression profiling |