TreatCFM002004's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| oxidation-reduction process | 0.003981985 | GO:0055114 |
| ubiquinone-6 biosynthetic process | 0.003981985 | GO:1901006 |
| alternative oxidase activity | 0.009636367 | GO:0009916 |
| cinnamoyl-CoA reductase activity | 0.009636367 | GO:0016621 |
| NADH dehydrogenase activity | 0.010276513 | GO:0003954 |
| aerobic respiration III (alternative oxidase pathway) | 0.017998465 | plantCyc |
| Phenylpropanoid biosynthesis | 0.017998465 | KEGG pathway |
| coenzyme binding | 0.03748754 | GO:0050662 |
| embryo development ending in seed dormancy | 0.041124329 | GO:0009793 |
| protein ubiquitination | 0.047209256 | GO:0016567 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001395 | AT5G10730 (8.00E-55) | NAD(P)-binding Rossmann-fold superfamily protein |
| CRO_T008829 | AT4G38220 (0) | AQI|aquaporin interactor |
| CRO_T012784 | AT3G22370 (3.00E-81) | AOX1A|alternative oxidase 1A; HSR3|hyper-sensitivity-related 3 |
| CRO_T016653 | AT1G15950 (3.00E-92) | CCR1|cinnamoyl coa reductase 1; IRX4|IRREGULAR XYLEM 4 |
| CRO_T023326 | AT3G02650 (2.00E-17) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T025343 | AT5G55840 (3.00E-34) | Pentatricopeptide repeat (PPR) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000565 | aerobic respiration III (alternative oxidase pathway) acetyl-CoA C-acetyltransferase activity Transcription_related, Transcription factor: bHLH Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM001082 | voltage-gated ion channel activity calcium channel activity regulation of ion transmembrane transport regulation of jasmonic acid biosynthetic process calcium-mediated signaling regulation of stomatal movement plant-type vacuole seed germination calcium ion transmembrane transport mRNA surveillance pathway phosphoprotein phosphatase activity formation of glycosidic bonds, GlycosylTransferases: GTnc defense response embryo development ending in seed dormancy protein dephosphorylation | details |
| TreatCFM001611 | Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Ubiquitin_Proteasome_system, E2: UBC Viral carcinogenesis Ubiquitin mediated proteolysis protein autophosphorylation peptidyl-serine phosphorylation abscisic acid-activated signaling pathway intracellular signal transduction | details |
| TreatCFM001740 | transcription factor TFIID complex Basal transcription factors endosperm development transcription from RNA polymerase II promoter translational initiation regulation of transcription from RNA polymerase II promoter embryo development ending in seed dormancy transcription cofactor activity protein heterodimerization activity translation initiation factor activity heterocyclic compound binding organic cyclic compound binding | details |
| TreatCFM001773 | negative regulation of cellular process ubiquinone-6 biosynthetic process membrane fusion Phenylpropanoid biosynthesis NADH dehydrogenase activity cinnamoyl-CoA reductase activity Basal transcription factors adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII SNAP receptor activity coenzyme binding | details |
| TreatCFM001992 | respiratory chain complex II nucleotide-excision repair factor 1 complex embryo development ending in seed dormancy nucleotide-excision repair, DNA incision, 5'-to lesion nucleotide-excision repair involved in interstrand cross-link repair Nucleotide excision repair tRNA wobble uridine modification resolution of meiotic recombination intermediates fructose 6-phosphate metabolic process glycolytic process through fructose-6-phosphate double-strand break repair via homologous recombination single-stranded DNA endodeoxyribonuclease activity diphosphate-fructose-6-phosphate 1-phosphotransferase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) glycolysis IV (plant cytosol) 6-phosphofructokinase activity oxidoreductase activity Glycolysis / Gluconeogenesis carbohydrate phosphorylation single-stranded DNA binding damaged DNA binding response to cytokinin isomerase activity FMN binding formation of glycosidic bonds, GlycosylTransferases: GTnc Photosynthesis | details |
| TreatCFM002003 | chloroplast RNA modification ubiquinone-6 biosynthetic process aerobic respiration III (alternative oxidase pathway) alternative oxidase activity nucleic acid binding NADH dehydrogenase activity RNA secondary structure unwinding | details |
Expression profiles
 Show details about module gene expression profiling |