TreatCFM001193's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.002127408 | cazy family |
| 5S rRNA binding | 0.01929425 | GO:0008097 |
| glycogen phosphorylase activity | 0.01929425 | GO:0008184 |
| regulation of photomorphogenesis | 0.025097213 | GO:0010099 |
| glycogen catabolic process | 0.025097213 | GO:0005980 |
| photoperiodism, flowering | 0.025097213 | GO:0048573 |
| red, far-red light phototransduction | 0.029566623 | GO:0009585 |
| leaf development | 0.034888209 | GO:0048366 |
| glycerol ether metabolic process | 0.034888209 | GO:0006662 |
| cellular response to oxidative stress | 0.034888209 | GO:0034599 |
| sulfate assimilation | 0.034888209 | GO:0000103 |
| oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 0.035671016 | GO:0016671 |
| peptidyl-prolyl cis-trans isomerase activity | 0.041845152 | GO:0003755 |
| protein disulfide oxidoreductase activity | 0.041845152 | GO:0015035 |
| response to water deprivation | 0.045268649 | GO:0009414 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001098 | AT4G02440 (5.00E-117) | EID1|EMPFINDLICHER IM DUNKELROTEN LICHT 1 |
| CRO_T002573 | AT3G29320 (0) | PHS1|alpha-glucan phosphorylase 1 |
| CRO_T011035 | AT1G50320 (6.00E-16) | ATHX|thioredoxin X |
| CRO_T012123 | AT1G08640 (8.00E-34) | CJD1|Chloroplast J-like domain 1 |
| CRO_T013423 | AT3G55920 (7.00E-24) | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein |
| CRO_T016432 | AT3G20230 (2.00E-59) | Ribosomal L18p/L5e family protein |
| CRO_T022195 | AT4G28210 (6.00E-70) | EMB1923|embryo defective 1923 |
| CRO_T030368 | AT4G22740 (1.00E-59) | glycine-rich protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001526 | triose-phosphate transmembrane transporter activity palmitoyl hydrolase activity phosphoglycerate transmembrane transporter activity 1-acylglycerol-3-phosphate O-acyltransferase activity thiolester hydrolase activity regulation of mRNA stability macromolecule depalmitoylation triose phosphate transmembrane transport phosphoglycerate transport translation release factor activity, codon specific translational termination phospholipid biosynthetic process carbohydrate transmembrane transport ribosome binding Fatty acid metabolism Glycerolipid metabolism CDP-diacylglycerol biosynthesis I cutin biosynthesis diacylglycerol and triacylglycerol biosynthesis sporopollenin precursors biosynthesis suberin monomers biosynthesis chloroplast cytoplasmic, membrane-bounded vesicle Lysosome ubiquitin-dependent protein catabolic process membrane | details |
| TreatCFM002006 | chloroplast thylakoid chlorophyll cycle chlorophyll synthetase activity Golgi medial cisterna chloroplastic endopeptidase Clp complex cis-Golgi network Arp2/3 protein complex actin filament polymerization DNA-templated transcription, termination regulation of vesicle targeting, to, from or within Golgi Cell cycle - Caulobacter Porphyrin and chlorophyll metabolism SNARE interactions in vesicular transport Arp2/3 complex-mediated actin nucleation SNARE binding actin binding SNAP receptor activity oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor protein disulfide oxidoreductase activity intra-Golgi vesicle-mediated transport chlorophyll biosynthetic process glycerol ether metabolic process sulfate assimilation cellular response to oxidative stress SNARE complex cytoplasm vesicle fusion ER to Golgi vesicle-mediated transport Endocytosis protein transport Golgi membrane serine-type endopeptidase activity | details |
Expression profiles
 Show details about module gene expression profiling |