TreatCFM002006's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| chloroplast thylakoid | 0.000596911 | GO:0009534 |
| chlorophyll cycle | 0.001595037 | plantCyc |
| chlorophyll synthetase activity | 0.006436646 | GO:0046408 |
| Golgi medial cisterna | 0.006923763 | GO:0005797 |
| chloroplastic endopeptidase Clp complex | 0.006923763 | GO:0009840 |
| cis-Golgi network | 0.009085425 | GO:0005801 |
| Arp2/3 protein complex | 0.010381041 | GO:0005885 |
| actin filament polymerization | 0.014386081 | GO:0030041 |
| DNA-templated transcription, termination | 0.014386081 | GO:0006353 |
| regulation of vesicle targeting, to, from or within Golgi | 0.015982172 | GO:0048209 |
| Cell cycle - Caulobacter | 0.021605059 | KEGG pathway |
| Porphyrin and chlorophyll metabolism | 0.021605059 | KEGG pathway |
| SNARE interactions in vesicular transport | 0.021605059 | KEGG pathway |
| Arp2/3 complex-mediated actin nucleation | 0.023964402 | GO:0034314 |
| SNARE binding | 0.025034386 | GO:0000149 |
| actin binding | 0.025034386 | GO:0003779 |
| SNAP receptor activity | 0.025034386 | GO:0005484 |
| oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 0.025034386 | GO:0016671 |
| protein disulfide oxidoreductase activity | 0.026191859 | GO:0015035 |
| intra-Golgi vesicle-mediated transport | 0.02736766 | GO:0006891 |
| chlorophyll biosynthetic process | 0.02736766 | GO:0015995 |
| glycerol ether metabolic process | 0.02736766 | GO:0006662 |
| sulfate assimilation | 0.02765948 | GO:0000103 |
| cellular response to oxidative stress | 0.02765948 | GO:0034599 |
| SNARE complex | 0.028856719 | GO:0031201 |
| cytoplasm | 0.028856719 | GO:0005737 |
| vesicle fusion | 0.030624615 | GO:0006906 |
| ER to Golgi vesicle-mediated transport | 0.033913138 | GO:0006888 |
| Endocytosis | 0.036674784 | KEGG pathway |
| protein transport | 0.039822808 | GO:0015031 |
| Golgi membrane | 0.041358833 | GO:0000139 |
| serine-type endopeptidase activity | 0.04383156 | GO:0004252 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006313 | AT1G06190 (3.00E-36) | RHON1|Rho-N 1 |
| CRO_T007901 | AT1G15880 (3.00E-20) | GOS11|golgi snare 11 |
| CRO_T011035 | AT1G50320 (6.00E-16) | ATHX|thioredoxin X |
| CRO_T017704 | AT4G17040 (4.00E-30) | CLPR4|CLP protease R subunit 4; HON5|happy on norflurazon 5 |
| CRO_T020217 | AT3G51820 (4.00E-164) | PDE325|PIGMENT DEFECTIVE 325 |
| CRO_T020799 | AT4G14147 (4.00E-63) | ARPC4|protein binding |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001193 | formation of glycosidic bonds, GlycosylTransferases: GTnc 5S rRNA binding glycogen phosphorylase activity regulation of photomorphogenesis glycogen catabolic process photoperiodism, flowering red, far-red light phototransduction leaf development glycerol ether metabolic process cellular response to oxidative stress sulfate assimilation oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor peptidyl-prolyl cis-trans isomerase activity protein disulfide oxidoreductase activity response to water deprivation | details |
| TreatCFM001596 | chlorophyll cycle chlorophyll synthetase activity Porphyrin and chlorophyll metabolism chlorophyll biosynthetic process clathrin vesicle coat vesicle-mediated transport transferase activity, transferring glycosyl groups | details |
Expression profiles
 Show details about module gene expression profiling |