TreatCFM001250's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ABC transporters | 0.006014577 | KEGG pathway |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.01353693 | cazy family |
| Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII | 0.01353693 | kinase family |
| Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box | 0.01353693 | ubs family |
| protein serine/threonine kinase activity | 0.022797146 | GO:0004674 |
| ATP binding | 0.022797146 | GO:0005524 |
| Transcription_related, Transcription factor: MIKC | 0.025522569 | TF family |
| Ubiquitin_Proteasome_system, DUB: OTU | 0.025522569 | ubs family |
| Transcription_related, Transcription factor: MYB-related | 0.025725638 | TF family |
| cell morphogenesis | 0.030829539 | GO:0000902 |
| protein phosphorylation | 0.032073791 | GO:0006468 |
| vegetative to reproductive phase transition of meristem | 0.032073791 | GO:0010228 |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.03259603 | ubs family |
| root development | 0.035570357 | GO:0048364 |
| Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | 0.048317543 | kinase family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T015516 | AT1G50670 (2.00E-76) | OTU-like cysteine protease family protein |
| CRO_T019382 | AT2G36910 (0) | ABCB1|ATP-binding cassette B1; ATPGP1|P GLYCOPROTEIN1; PGP1|P-GLYCOPROTEIN 1 |
| CRO_T020978 | AT3G51770 (0) | ATEOL1|ARABIDOPSIS ETHYLENE OVERPRODUCER 1; ETO1|ETHYLENE OVERPRODUCER 1 |
| CRO_T028339 | AT2G28250 (6.00E-162) | NCRK|Protein kinase superfamily protein |
| CRO_T030222 | AT4G37940 (1.00E-25) | AGL21|AGAMOUS-like 21 |
| CRO_T031372 | AT1G28440 (0) | HSL1|HAESA-like 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000089 | ABC transporters photosystem II reaction center | details |
| TreatCFM000306 | Inositol phosphate metabolism | details |
| TreatCFM001249 | positive regulation of translational termination translational frameshifting positive regulation of translational elongation NOD-like receptor signaling pathway ABC transporters Inositol phosphate metabolism cell morphogenesis oxidation-reduction process phosphatidylcholine phospholipase C activity Cytochrome_P450, Cytochrome P450: CYP71B Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, DUB: OTU glycerol ether metabolic process cellular response to oxidative stress sulfate assimilation | details |
| TreatCFM001251 | Ubiquitin_Proteasome_system, DUB: OTU glycerol-3-phosphate shuttle L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I urea cycle carbamoyl-phosphate synthase complex L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I positive regulation of translational elongation translational frameshifting positive regulation of translational termination pyridoxal phosphate biosynthetic process glycerol-3-phosphate catabolic process cell morphogenesis carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity ion binding glycerol-3-phosphate dehydrogenase [NAD+] activity pyridoxamine-phosphate oxidase activity 'de novo' pyrimidine nucleobase biosynthetic process glycerol-3-phosphate dehydrogenase complex glutamine metabolic process arginine biosynthetic process Glycerophospholipid metabolism Pyrimidine metabolism ribosome binding FMN binding translation elongation factor activity translational initiation | details |
| TreatCFM001617 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: MYB-related xylan biosynthetic process plant-type secondary cell wall biogenesis phenylpropanoid biosynthetic process ABC transporters regulation of catalytic activity Endocytosis glucuronosyltransferase activity guiding stereospecific synthesis activity small GTPase mediated signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |