TreatCFM001285's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 0.002303262 | GO:0031146 |
| SCF ubiquitin ligase complex | 0.002657217 | GO:0019005 |
| ubiquitin-protein transferase activity | 0.020047703 | GO:0004842 |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.036841041 | ubs family |
| Endocytosis | 0.04413962 | KEGG pathway |
| Spliceosome | 0.04413962 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000259 | AT3G29390 (4.00E-119) | RIK|RS2-interacting KH protein |
| CRO_T004405 | AT3G21290 (9.00E-09) | dentin sialophosphoprotein-related |
| CRO_T012833 | AT2G43160 (1.00E-115) | ENTH/VHS family protein |
| CRO_T014200 | AT4G31570 (0) | |
| CRO_T023414 | AT5G49610 (4.00E-15) | F-box family protein |
| CRO_T032573 | AT3G44600 (1.00E-38) | CYP71|cyclophilin 71 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001153 | 3-hydroxyacyl-CoA dehydrogenase activity unsaturated, even numbered fatty acid β-oxidation fatty acid β-oxidation II (peroxisome) fatty acid metabolic process Fatty acid metabolism very long chain fatty acid biosynthesis II Valine, leucine and isoleucine degradation innate immune response protein monoubiquitination histone ubiquitination cytidine to uridine editing leucine catabolic process L-leucine degradation I reproductive structure development SCF-dependent proteasomal ubiquitin-dependent protein catabolic process post-embryonic development jasmonic acid biosynthesis cobalt ion binding SCF ubiquitin ligase complex | details |
| TreatCFM001474 | COPII vesicle coat sterol biosynthetic process ER to Golgi vesicle-mediated transport fatty acid biosynthetic process | details |
| TreatCFM001745 | COPII vesicle coat protein homooligomerization sterol biosynthetic process endoplasmic reticulum membrane ER to Golgi vesicle-mediated transport Steroid biosynthesis fatty acid biosynthetic process | details |
| TreatCFM002176 | intracellular protein transport SNARE complex disassembly membrane fusion soluble NSF attachment protein activity syntaxin binding SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Autophagy - yeast Lysosome NF-kappa B signaling pathway SCF ubiquitin ligase complex membrane coat vesicle-mediated transport Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII SNARE complex protein transporter activity | details |
Expression profiles
 Show details about module gene expression profiling |