TreatCFM002176's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| intracellular protein transport | 0.002590559 | GO:0006886 |
| SNARE complex disassembly | 0.002606576 | GO:0035494 |
| membrane fusion | 0.006079763 | GO:0061025 |
| soluble NSF attachment protein activity | 0.006514994 | GO:0005483 |
| syntaxin binding | 0.006514994 | GO:0019905 |
| SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 0.008464488 | GO:0031146 |
| Autophagy - yeast | 0.02258377 | KEGG pathway |
| Lysosome | 0.02258377 | KEGG pathway |
| NF-kappa B signaling pathway | 0.02258377 | KEGG pathway |
| SCF ubiquitin ligase complex | 0.024114247 | GO:0019005 |
| membrane coat | 0.024114247 | GO:0030117 |
| vesicle-mediated transport | 0.037341075 | GO:0016192 |
| Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | 0.038900601 | kinase family |
| SNARE complex | 0.041723977 | GO:0031201 |
| protein transporter activity | 0.044151652 | GO:0008565 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002315 | AT2G17380 (3.00E-85) | AP19|associated protein 19 |
| CRO_T005887 | AT2G02800 (4.00E-169) | APK2B|protein kinase 2B; Kin2|kinase 2 |
| CRO_T018340 | AT3G56190 (1.00E-81) | ALPHA-SNAP2|alpha-soluble NSF attachment protein 2 |
| CRO_T023414 | AT5G49610 (4.00E-15) | F-box family protein |
| CRO_T023669 | AT5G55610 (1.00E-38) | unknown protein |
| CRO_T032573 | AT3G44600 (1.00E-38) | CYP71|cyclophilin 71 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001153 | 3-hydroxyacyl-CoA dehydrogenase activity unsaturated, even numbered fatty acid β-oxidation fatty acid β-oxidation II (peroxisome) fatty acid metabolic process Fatty acid metabolism very long chain fatty acid biosynthesis II Valine, leucine and isoleucine degradation innate immune response protein monoubiquitination histone ubiquitination cytidine to uridine editing leucine catabolic process L-leucine degradation I reproductive structure development SCF-dependent proteasomal ubiquitin-dependent protein catabolic process post-embryonic development jasmonic acid biosynthesis cobalt ion binding SCF ubiquitin ligase complex | details |
| TreatCFM001285 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process SCF ubiquitin ligase complex ubiquitin-protein transferase activity Ubiquitin_Proteasome_system, E3 adaptor: F-box Endocytosis Spliceosome | details |
| TreatCFM001474 | COPII vesicle coat sterol biosynthetic process ER to Golgi vesicle-mediated transport fatty acid biosynthetic process | details |
| TreatCFM001544 | coniferin metabolism ceramide metabolic process hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides Golgi apparatus vacuolar proton-transporting V-type ATPase, V1 domain plant-type vacuole hydrogen ion transmembrane transporter activity | details |
| TreatCFM001745 | COPII vesicle coat protein homooligomerization sterol biosynthetic process endoplasmic reticulum membrane ER to Golgi vesicle-mediated transport Steroid biosynthesis fatty acid biosynthetic process | details |
| TreatCFM002139 | geranylgeraniol kinase activity geraniol kinase activity CTP:2-trans,-6-trans-farnesol kinase activity soluble NSF attachment protein activity farnesylcysteine salvage pathway SNARE complex disassembly farnesol metabolic process protein import syntaxin binding protein targeting membrane fusion carpel development adenosine ribonucleotides de novo biosynthesis Transcription_related, Transcription factor: FAR1 ABC transporters Autophagy - yeast Protein export Terpenoid backbone biosynthesis ATP binding nucleotidyltransferase activity amino acid binding | details |
Expression profiles
 Show details about module gene expression profiling |