TreatCFM001309's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| receptor serine/threonine kinase binding | 0.008833181 | GO:0033612 |
| oxygen-dependent protoporphyrinogen oxidase activity | 0.008833181 | GO:0004729 |
| D-alanine-D-alanine ligase activity | 0.008833181 | GO:0008716 |
| 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) | 0.014595708 | plantCyc |
| heme biosynthesis I (aerobic) | 0.014595708 | plantCyc |
| trans-zeatin biosynthesis | 0.015062641 | plantCyc |
| Porphyrin and chlorophyll metabolism | 0.017465255 | KEGG pathway |
| Zeatin biosynthesis | 0.017465255 | KEGG pathway |
| protoporphyrinogen IX biosynthetic process | 0.017655923 | GO:0006782 |
| gametophyte development | 0.017655923 | GO:0048229 |
| floral organ development | 0.017655923 | GO:0048437 |
| regulation of meristem growth | 0.017655923 | GO:0010075 |
| AMP dimethylallyltransferase activity | 0.01941463 | GO:0009824 |
| protein self-association | 0.01941463 | GO:0043621 |
| cytokinin biosynthetic process | 0.026452601 | GO:0009691 |
| tRNA processing | 0.026452601 | GO:0008033 |
| Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | 0.038262783 | kinase family |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.038262783 | ubs family |
| cell wall organization or biogenesis | 0.047753627 | GO:0071554 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001451 | AT1G03010 (0) | Phototropic-responsive NPH3 family protein |
| CRO_T001941 | AT1G22610 (0) | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein |
| CRO_T002058 | AT1G28440 (0) | HSL1|HAESA-like 1 |
| CRO_T004834 | AT3G08840 (1.00E-07) | D-alanine--D-alanine ligase family |
| CRO_T008600 | AT3G63110 (3.00E-91) | ATIPT3|isopentenyltransferase 3 |
| CRO_T015534 | AT5G14220 (2.00E-159) | MEE61|MATERNAL EFFECT EMBRYO ARREST 61 |
| CRO_T017584 | AT1G67170 (6.00E-42) | unknown protein |
| CRO_T021820 | AT1G01110 (7.00E-16) | IQD18|IQ-domain 18 |
| CRO_T029184 | AT3G12060 (5.00E-75) | TBL1|TRICHOME BIREFRINGENCE-LIKE 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001805 | oxygen-dependent protoporphyrinogen oxidase activity xylan metabolic process positive regulation of programmed cell death xylem vessel member cell differentiation regulation of cell wall macromolecule metabolic process metaxylem development secondary cell wall 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) heme biosynthesis I (aerobic) Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI protoporphyrinogen IX biosynthetic process ribosomal small subunit biogenesis Porphyrin and chlorophyll metabolism Transcription_related, Transcription factor: NAC positive regulation of transcription, DNA-templated protein homodimerization activity | details |
| TreatCFM001876 | termination of RNA polymerase II transcription mRNA cleavage mRNA polyadenylation mRNA cleavage factor complex RNA polymerase II core binding D-alanine-D-alanine ligase activity mRNA surveillance pathway N,N-dimethylaniline monooxygenase activity mRNA binding | details |
| TreatCFM001994 | floral organ development UDP-N-acetylglucosamine biosynthetic process gametophyte development regulation of meristem growth receptor serine/threonine kinase binding UDP-N-acetylglucosamine diphosphorylase activity D-alanine-D-alanine ligase activity double-strand break repair via homologous recombination UDP-N-acetyl-D-glucosamine biosynthesis II UDP-glucose biosynthesis stachyose degradation sucrose biosynthesis II protein self-association Amino sugar and nucleotide sugar metabolism maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Transcription_related, Transcription regulator: SNF2 Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII metal ion binding organic cyclic compound binding heterocyclic compound binding | details |
Expression profiles
 Show details about module gene expression profiling |