TreatCFM001805's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| oxygen-dependent protoporphyrinogen oxidase activity | 0.002955301 | GO:0004729 |
| xylan metabolic process | 0.003533899 | GO:0045491 |
| positive regulation of programmed cell death | 0.003533899 | GO:0043068 |
| xylem vessel member cell differentiation | 0.003533899 | GO:0048759 |
| regulation of cell wall macromolecule metabolic process | 0.003533899 | GO:0010981 |
| metaxylem development | 0.003533899 | GO:0090058 |
| secondary cell wall | 0.004048762 | GO:0009531 |
| 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) | 0.005312472 | plantCyc |
| heme biosynthesis I (aerobic) | 0.005312472 | plantCyc |
| Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI | 0.007440758 | kinase family |
| protoporphyrinogen IX biosynthetic process | 0.007569284 | GO:0006782 |
| ribosomal small subunit biogenesis | 0.007569284 | GO:0042274 |
| Porphyrin and chlorophyll metabolism | 0.007777821 | KEGG pathway |
| Transcription_related, Transcription factor: NAC | 0.019577886 | TF family |
| positive regulation of transcription, DNA-templated | 0.030832643 | GO:0045893 |
| protein homodimerization activity | 0.046336691 | GO:0042803 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T012630 | AT5G42560 (2.00E-53) | Abscisic acid-responsive (TB2/DP1, HVA22) family protein |
| CRO_T012770 | AT2G18060 (6.00E-42) | ANAC037|Arabidopsis NAC domain containing protein 37; VND1|vascular related NAC-domain protein 1 |
| CRO_T015534 | AT5G14220 (2.00E-159) | MEE61|MATERNAL EFFECT EMBRYO ARREST 61 |
| CRO_T024626 | AT5G18910 (9.00E-96) | Protein kinase superfamily protein |
| CRO_T029824 | AT1G77122 (8.00E-42) | Uncharacterised protein family UPF0090 |
| CRO_T033739 | AT1G64590 (2.00E-24) | NAD(P)-binding Rossmann-fold superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000749 | thioredoxin-disulfide reductase activity trans-lycopene biosynthesis II (plants) pyruvate decarboxylation to acetyl CoA thioredoxin pathway Selenocompound metabolism Carotenoid biosynthesis transferase activity, transferring acyl groups translation initiation factor activity peptidase activity ribosomal small subunit biogenesis removal of superoxide radicals | details |
| TreatCFM001309 | receptor serine/threonine kinase binding oxygen-dependent protoporphyrinogen oxidase activity D-alanine-D-alanine ligase activity 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) heme biosynthesis I (aerobic) trans-zeatin biosynthesis Porphyrin and chlorophyll metabolism Zeatin biosynthesis protoporphyrinogen IX biosynthetic process gametophyte development floral organ development regulation of meristem growth AMP dimethylallyltransferase activity protein self-association cytokinin biosynthetic process tRNA processing Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Ubiquitin_Proteasome_system, E3 adaptor: BTB cell wall organization or biogenesis | details |
| TreatCFM001337 | ribosomal small subunit biogenesis transporter activity peptidase activity | details |
Expression profiles
 Show details about module gene expression profiling |