TreatCFM001333's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| UDP-glucuronate biosynthetic process | 0.003909574 | GO:0006065 |
| valine biosynthetic process | 0.003909574 | GO:0009099 |
| ketol-acid reductoisomerase activity | 0.004048762 | GO:0004455 |
| UDP-glucose 6-dehydrogenase activity | 0.005059831 | GO:0003979 |
| isoleucine biosynthetic process | 0.00521084 | GO:0009097 |
| glycosaminoglycan biosynthetic process | 0.00521084 | GO:0006024 |
| L-valine biosynthesis | 0.005906236 | plantCyc |
| UDP-α-D-glucuronate biosynthesis (from UDP-glucose) | 0.005906236 | plantCyc |
| UDP-D-xylose biosynthesis | 0.005906236 | plantCyc |
| UDP-sugars interconversion | 0.006641571 | plantCyc |
| 2-Oxocarboxylic acid metabolism | 0.022276143 | KEGG pathway |
| isomerase activity | 0.024231625 | GO:0016853 |
| Pentose and glucuronate interconversions | 0.025357101 | KEGG pathway |
| NAD binding | 0.033244724 | GO:0051287 |
| copper ion binding | 0.040195564 | GO:0005507 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003231 | AT3G58610 (0) | ketol-acid reductoisomerase |
| CRO_T005668 | AT4G05400 (1.00E-42) | copper ion binding |
| CRO_T006621 | AT1G73020 (0) | unknown protein |
| CRO_T028717 | AT4G30996 (3.00E-22) | NKS1|NA(+)- AND K(+)-SENSITIVE 1 |
| CRO_T030656 | AT1G26570 (0) | ATUGD1|UDP-GLUCOSE DEHYDROGENASE 1 |
| CRO_T032406 | AT3G60050 (2.00E-20) | Pentatricopeptide repeat (PPR) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000259 | Oxidative phosphorylation ATP synthesis coupled proton transport proton-transporting ATPase activity, rotational mechanism hydrogen ion transmembrane transporter activity proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATP synthase complex, catalytic core F(1) ATP hydrolysis coupled proton transport Progesterone-mediated oocyte maturation Protein_kinases_phosphatases, PPC:1.3.7: Receptor like protein kinase/Receptor lectin kinase like protein mitochondrion methyl indole-3-acetate esterase activity ketol-acid reductoisomerase activity photosynthetic acclimation indoleacetic acid conjugate metabolic process ATPase activity, coupled to transmembrane movement of ions, rotational mechanism valine biosynthetic process phosphatidylglycerol biosynthetic process CDP-diacylglycerol biosynthesis II L-valine biosynthesis methyl indole-3-acetate interconversion CDP-diacylglycerol biosynthetic process phosphatidate cytidylyltransferase activity | details |
| TreatCFM000314 | L-valine biosynthesis ketol-acid reductoisomerase activity valine biosynthetic process isoleucine biosynthetic process 2-Oxocarboxylic acid metabolism Transcription_related, Transcription factor: C3H isomerase activity | details |
| TreatCFM000443 | L-valine biosynthesis ketol-acid reductoisomerase activity valine biosynthetic process isoleucine biosynthetic process cullin deneddylation positive regulation of G2/M transition of mitotic cell cycle 2-Oxocarboxylic acid metabolism isomerase activity Transcription_related, Transcription factor: C3H Ubiquitin_Proteasome_system, E3: U-box COP9 signalosome ubiquitin-dependent protein catabolic process ubiquitin-protein transferase activity copper ion binding proteasome complex | details |
| TreatCFM002024 | mitochondrial respiratory chain complex IV assembly protein maturation by iron-sulfur cluster transfer iron-sulfur cluster assembly ferrous iron binding structural molecule activity 4 iron, 4 sulfur cluster binding 2 iron, 2 sulfur cluster binding S-adenosylmethionine-dependent methyltransferase activity | details |
Expression profiles
 Show details about module gene expression profiling |