TreatCFM001336's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| RNA polymerase II core promoter proximal region sequence-specific DNA binding | 0.007709321 | GO:0000978 |
| transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 0.007709321 | GO:0001078 |
| Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase | 0.012790608 | kinase family |
| Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase | 0.012790608 | kinase family |
| transcription coactivator activity | 0.024372484 | GO:0003713 |
| FK506 binding | 0.024372484 | GO:0005528 |
| Transcription_related, Transcription regulator: SNF2 | 0.030069933 | TF family |
| peptidyl-prolyl cis-trans isomerase activity | 0.042998432 | GO:0003755 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008104 | AT5G08550 (0) | ILP1|increased level of polyploidy1-1D |
| CRO_T009265 | AT1G69730 (1.00E-73) | Wall-associated kinase family protein |
| CRO_T010651 | AT3G47610 (9.00E-110) | transcription regulators; zinc ion binding |
| CRO_T015959 | AT3G51630 (8.00E-117) | WNK5|with no lysine (K) kinase 5 |
| CRO_T020531 | AT5G45680 (2.00E-20) | ATFKBP13|FK506 BINDING PROTEIN 13; FKBP13|FK506-binding protein 13 |
| CRO_T023102 | AT3G54280 (1.00E-17) | RGD3|ROOT GROWTH DEFECTIVE 3 |
| CRO_T024359 | AT1G51550 (2.00E-133) | Kelch repeat-containing F-box family protein |
| CRO_T028837 | AT1G05960 (2.00E-60) | ARM repeat superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001669 | Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase mevalonate pathway I Carbon metabolism protein transmembrane transport protein localization to organelle cysteine biosynthetic process from serine acetyl-CoA C-acetyltransferase activity cysteine synthase activity protein channel activity cellular amino acid biosynthetic process Plant-pathogen interaction RNA degradation | details |
| TreatCFM001822 | Spliceosome mRNA splicing, via spliceosome regulation of histone H4 acetylation histone H4-K5 acetylation regulation of timing of transition from vegetative to reproductive phase RNA polymerase II core promoter proximal region sequence-specific DNA binding transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding DNA replication factor A complex Cul4-RING E3 ubiquitin ligase complex Prp19 complex NuA4 histone acetyltransferase complex regulation of gene expression regulation of transcription, DNA-templated regulation of flower development precatalytic spliceosome catalytic step 2 spliceosome RNA secondary structure unwinding Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM002088 | Spliceosome Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding RNA polymerase II core promoter proximal region sequence-specific DNA binding Transcription_related, Transcription factor: GRAS MAPK signaling pathway - plant spliceosomal complex | details |
| TreatCFM002118 | organic acid transmembrane transporter activity molybdate ion transmembrane transporter activity molybdate ion transport organic acid transmembrane transport transcription coactivator activity transcription from RNA polymerase II promoter positive regulation of transcription, DNA-templated | details |
Expression profiles
 Show details about module gene expression profiling |