TreatCFM002088's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Spliceosome | 0.001536879 | KEGG pathway |
| Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase | 0.006201457 | kinase family |
| transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 0.011553825 | GO:0001078 |
| RNA polymerase II core promoter proximal region sequence-specific DNA binding | 0.011553825 | GO:0000978 |
| Transcription_related, Transcription factor: GRAS | 0.026181577 | TF family |
| MAPK signaling pathway - plant | 0.033807088 | KEGG pathway |
| spliceosomal complex | 0.049511666 | GO:0005681 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007288 | AT1G79120 (6.00E-135) | Ubiquitin carboxyl-terminal hydrolase family protein |
| CRO_T008104 | AT5G08550 (0) | ILP1|increased level of polyploidy1-1D |
| CRO_T015959 | AT3G51630 (8.00E-117) | WNK5|with no lysine (K) kinase 5 |
| CRO_T021787 | AT4G31750 (5.00E-36) | WIN2|HOPW1-1-interacting 2 |
| CRO_T026070 | AT1G07530 (2.00E-167) | ATGRAS2|GRAS (GAI, RGA, SCR) 2; SCL14|SCARECROW-like 14 |
| CRO_T030792 | AT1G55150 (2.00E-115) | RH20|RNA helicase 20 |
| CRO_T032054 | AT3G26560 (0) | ATP-dependent RNA helicase, putative |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001336 | RNA polymerase II core promoter proximal region sequence-specific DNA binding transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase transcription coactivator activity FK506 binding Transcription_related, Transcription regulator: SNF2 peptidyl-prolyl cis-trans isomerase activity | details |
| TreatCFM001492 | formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc alpha-1,3-mannosyltransferase activity galactoside 2-alpha-L-fucosyltransferase activity mannosylglycoprotein endo-beta-mannosidase activity ceramide metabolic process L-amino acid transport fucosylation nucleocytoplasmic transport xyloglucan biosynthetic process mannosylation L-alpha-amino acid transmembrane transport hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides plant-type cell wall biogenesis fatty acid β-oxidation II (peroxisome) protein N-glycosylation (eukaryotic, high mannose) unsaturated, even numbered fatty acid β-oxidation L-amino acid transmembrane transporter activity MicroRNAs in cancer translation | details |
| TreatCFM001645 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides mannosylglycoprotein endo-beta-mannosidase activity Fanconi anemia pathway interstrand cross-link repair receptor signaling protein serine/threonine kinase activity nuclease activity Transcription_related, Transcription factor: GRAS | details |
| TreatCFM001669 | Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase mevalonate pathway I Carbon metabolism protein transmembrane transport protein localization to organelle cysteine biosynthetic process from serine acetyl-CoA C-acetyltransferase activity cysteine synthase activity protein channel activity cellular amino acid biosynthetic process Plant-pathogen interaction RNA degradation | details |
| TreatCFM001782 | translation initiation factor binding formation of translation preinitiation complex regulation of translational initiation eukaryotic 43S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic 48S preinitiation complex translation initiation factor activity RNA transport Transcriptional misregulation in cancers microtubule cytoskeleton cytoskeletal part cytokinesis by cell plate formation Transcription_related, Transcription factor: FAR1 | details |
| TreatCFM001822 | Spliceosome mRNA splicing, via spliceosome regulation of histone H4 acetylation histone H4-K5 acetylation regulation of timing of transition from vegetative to reproductive phase RNA polymerase II core promoter proximal region sequence-specific DNA binding transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding DNA replication factor A complex Cul4-RING E3 ubiquitin ligase complex Prp19 complex NuA4 histone acetyltransferase complex regulation of gene expression regulation of transcription, DNA-templated regulation of flower development precatalytic spliceosome catalytic step 2 spliceosome RNA secondary structure unwinding Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
Expression profiles
 Show details about module gene expression profiling |