TreatCFM001429's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.002171087 | cazy family |
| Transcription_related, Transcription factor: GRF | 0.002171087 | TF family |
| DNA-3-methylguanine glycosylase activity | 0.002248884 | GO:0052822 |
| DNA-7-methylguanine glycosylase activity | 0.002248884 | GO:0043916 |
| undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity | 0.002248884 | GO:0050511 |
| DNA-7-methyladenine glycosylase activity | 0.002248884 | GO:0052821 |
| Base excision repair | 0.004955011 | KEGG pathway |
| DNA-3-methyladenine glycosylase activity | 0.006294085 | GO:0008725 |
| developmental process | 0.013135078 | GO:0032502 |
| lipid glycosylation | 0.013135078 | GO:0030259 |
| base-excision repair | 0.024990376 | GO:0006284 |
| glutathione transferase activity | 0.028395101 | GO:0004364 |
| glutathione metabolic process | 0.037419165 | GO:0006749 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001894 | AT3G12040 (6.00E-96) | DNA-3-methyladenine glycosylase (MAG) |
| CRO_T003499 | AT1G73740 (2.00E-96) | UDP-Glycosyltransferase superfamily protein |
| CRO_T006866 | AT1G77290 (5.00E-108) | Glutathione S-transferase family protein |
| CRO_T008764 | AT3G63090 (4.00E-30) | Ubiquitin carboxyl-terminal hydrolase family protein |
| CRO_T016912 | AT5G60150 (1.00E-09) | unknown protein |
| CRO_T025066 | AT1G25682 (2.00E-70) | Family of unknown function (DUF572) |
| CRO_T031769 | AT2G22840 (2.00E-70) | AtGRF1|growth-regulating factor 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000184 | trans-lycopene biosynthesis II (plants) biotin biosynthetic process endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribosomal large subunit export from nucleus ribosomal large subunit biogenesis dethiobiotin synthase activity adenosylmethionine-8-amino-7-oxononanoate transaminase activity Biotin metabolism ribosomal large subunit binding | details |
| TreatCFM000521 | formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc mitochondrial respiratory chain complex IV assembly carbohydrate metabolic process lipid glycosylation protein maturation by iron-sulfur cluster transfer undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity ferrous iron binding iron-sulfur cluster assembly glucose transmembrane transport glucose import proton transport structural molecule activity 4 iron, 4 sulfur cluster binding glucose transmembrane transporter activity 2 iron, 2 sulfur cluster binding sugar:proton symporter activity | details |
| TreatCFM000749 | thioredoxin-disulfide reductase activity trans-lycopene biosynthesis II (plants) pyruvate decarboxylation to acetyl CoA thioredoxin pathway Selenocompound metabolism Carotenoid biosynthesis transferase activity, transferring acyl groups translation initiation factor activity peptidase activity ribosomal small subunit biogenesis removal of superoxide radicals | details |
| TreatCFM001583 | apoplast hydroquinone:oxygen oxidoreductase activity lignin catabolic process chloroplast organization 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity copper ion binding embryo development ending in seed dormancy Transcription_related, Transcription factor: ARF Transcription_related, Transcription factor: GRF cellular amino acid catabolic process menaquinone biosynthetic process Calcium signaling pathway protein import into chloroplast stroma Ubiquinone and other terpenoid-quinone biosynthesis developmental process redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 thiamine pyrophosphate binding protein refolding transcription, DNA-templated microtubule-based process | details |
| TreatCFM001917 | Transcription_related, Transcription factor: GRF redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 protein import into chloroplast stroma developmental process chloroplast inner membrane lignin biosynthetic process chloroplast organization lignin catabolic process protein transporter activity hydroquinone:oxygen oxidoreductase activity oxidoreductase activity, oxidizing metal ions | details |
| TreatCFM001918 | Transcription_related, Transcription factor: GRF developmental process protein import into chloroplast stroma regulation of transcription, DNA-templated Transcription_related, Transcription factor: FAR1 protein transporter activity glutathione transferase activity chloroplast organization glutathione metabolic process chloroplast inner membrane embryo development ending in seed dormancy | details |
| TreatCFM002075 | phosphocholine phosphatase activity phosphoethanolamine phosphatase activity undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Vitamin B6 metabolism response to metal ion Glycosylphosphatidylinositol(GPI)-anchor biosynthesis GPI-anchor transamidase complex Ubiquitin_Proteasome_system, DUB: USP lipid glycosylation attachment of GPI anchor to protein cysteine-type peptidase activity cellular protein metabolic process | details |
| TreatCFM002099 | DNA-7-methylguanine glycosylase activity DNA-3-methylguanine glycosylase activity DNA-7-methyladenine glycosylase activity DNA-3-methyladenine glycosylase activity U1 snRNA binding snRNA stem-loop binding U1 snRNP protein domain specific binding viral nucleocapsid base-excision repair Base excision repair MAPK signaling pathway - yeast mRNA splicing, via spliceosome | details |
Expression profiles
 Show details about module gene expression profiling |