TreatCFM002099's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| DNA-7-methylguanine glycosylase activity | 0.003009763 | GO:0043916 |
| DNA-3-methylguanine glycosylase activity | 0.003009763 | GO:0052822 |
| DNA-7-methyladenine glycosylase activity | 0.003009763 | GO:0052821 |
| DNA-3-methyladenine glycosylase activity | 0.00526514 | GO:0008725 |
| U1 snRNA binding | 0.00526514 | GO:0030619 |
| snRNA stem-loop binding | 0.00526514 | GO:0035614 |
| U1 snRNP | 0.005847606 | GO:0005685 |
| protein domain specific binding | 0.008377528 | GO:0019904 |
| viral nucleocapsid | 0.009021865 | GO:0019013 |
| base-excision repair | 0.010624943 | GO:0006284 |
| Base excision repair | 0.011683984 | KEGG pathway |
| MAPK signaling pathway - yeast | 0.011683984 | KEGG pathway |
| mRNA splicing, via spliceosome | 0.012987699 | GO:0000398 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001894 | AT3G12040 (6.00E-96) | DNA-3-methyladenine glycosylase (MAG) |
| CRO_T008500 | AT1G78220 (3.00E-56) | GF14 PI|GF 14 PI CHAIN; GRF13|general regulatory factor 13 |
| CRO_T011980 | - | - |
| CRO_T014979 | - | - |
| CRO_T031540 | AT1G06960 (4.00E-20) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T032198 | AT1G58410 (1.00E-36) | Disease resistance protein (CC-NBS-LRR class) family |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001334 | mitochondrial respiratory chain complex IV assembly biotin biosynthetic process adenosylmethionine-8-amino-7-oxononanoate transaminase activity dethiobiotin synthase activity Biotin metabolism mitochondrion | details |
| TreatCFM001429 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: GRF DNA-3-methylguanine glycosylase activity DNA-7-methylguanine glycosylase activity undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity DNA-7-methyladenine glycosylase activity Base excision repair DNA-3-methyladenine glycosylase activity developmental process lipid glycosylation base-excision repair glutathione transferase activity glutathione metabolic process | details |
| TreatCFM001468 | Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) L-glutamine degradation I L-histidine biosynthesis ligase activity 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity oxo-acid-lyase activity galactosylxylosylprotein 3-beta-galactosyltransferase activity imidazoleglycerol-phosphate synthase activity protein O-linked glycosylation via hydroxyproline arabinogalactan protein metabolic process Transcription_related, Transcription factor: MIKC formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001753 | N-terminal peptidyl-serine acetylation N-terminal peptidyl-glutamic acid acetylation internal protein amino acid acetylation peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity double-stranded RNA binding snRNA stem-loop binding U1 snRNA binding Transcription_related, Transcription regulator: GNAT karyogamy endosomal transport NatA complex AP-type membrane coat adaptor complex ribonuclease III activity cytosolic ribosome U1 snRNP RNA phosphodiester bond hydrolysis, endonucleolytic viral nucleocapsid RNA processing mRNA splicing, via spliceosome Spliceosome | details |
| TreatCFM001757 | internal protein amino acid acetylation N-terminal peptidyl-serine acetylation N-terminal peptidyl-glutamic acid acetylation endosomal transport peptide-glutamate-N-acetyltransferase activity peptide-serine-N-acetyltransferase activity NatA complex AP-type membrane coat adaptor complex U1 snRNA binding snRNA stem-loop binding NLS-bearing protein import into nucleus nucleotide binding U1 snRNP cytosolic ribosome nuclear localization sequence binding Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Transcription_related, Transcription regulator: GNAT nucleoplasm nuclear pore viral nucleocapsid mRNA splicing, via spliceosome Spliceosome protein transporter activity | details |
| TreatCFM002024 | mitochondrial respiratory chain complex IV assembly protein maturation by iron-sulfur cluster transfer iron-sulfur cluster assembly ferrous iron binding structural molecule activity 4 iron, 4 sulfur cluster binding 2 iron, 2 sulfur cluster binding S-adenosylmethionine-dependent methyltransferase activity | details |
| TreatCFM002111 | sulfate reduction II (assimilatory) Sulfur metabolism sulfate reduction sulfide oxidation, using siroheme sulfite reductase DNA packaging sulfite reductase activity sulfite reductase (ferredoxin) activity regulation of DNA replication base-excision repair recognition of pollen negative regulation of transcription, DNA-templated Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Transcription_related, Transcription factor: Trihelix chloroplast nucleoid stromule DNA binding | details |
Expression profiles
 Show details about module gene expression profiling |