TreatCFM001444's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: G2-like | 0.004778752 | TF family |
| S-adenosyl-L-methionine cycle II | 0.006768465 | plantCyc |
| 2'-deoxymugineic acid phytosiderophore biosynthesis | 0.006768465 | plantCyc |
| L-methionine degradation I (to L-homocysteine) | 0.006768465 | plantCyc |
| L-methionine salvage cycle I (bacteria and plants) | 0.006768465 | plantCyc |
| L-methionine salvage cycle II (plants) | 0.006768465 | plantCyc |
| S-adenosyl-L-methionine biosynthesis | 0.006768465 | plantCyc |
| ribokinase activity | 0.009632807 | GO:0004747 |
| methionine adenosyltransferase activity | 0.009632807 | GO:0004478 |
| aminoacyl-tRNA ligase activity | 0.009632807 | GO:0004812 |
| adenosine kinase activity | 0.009632807 | GO:0004001 |
| tRNA aminoacylation for protein translation | 0.010152697 | GO:0006418 |
| S-adenosylmethionine biosynthetic process | 0.010152697 | GO:0006556 |
| D-ribose metabolic process | 0.010152697 | GO:0006014 |
| AMP biosynthetic process | 0.010152697 | GO:0006167 |
| ethylene biosynthesis I (plants) | 0.013524933 | plantCyc |
| one-carbon metabolic process | 0.01353093 | GO:0006730 |
| carbohydrate phosphorylation | 0.015779088 | GO:0046835 |
| glycolysis IV (plant cytosol) | 0.024753611 | plantCyc |
| Aminoacyl-tRNA biosynthesis | 0.024832496 | KEGG pathway |
| Biosynthesis of amino acids | 0.024832496 | KEGG pathway |
| glycolysis I (from glucose 6-phosphate) | 0.02648625 | plantCyc |
| chloroplast | 0.046864817 | GO:0009507 |
| Photosynthesis | 0.048111019 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002382 | AT1G14600 (7.00E-22) | Homeodomain-like superfamily protein |
| CRO_T009548 | AT2G17080 (8.00E-39) | Arabidopsis protein of unknown function (DUF241) |
| CRO_T015637 | AT3G13490 (1.00E-15) | ATKRS-2|LYSYL-TRNA SYNTHETASE 2; OVA5|OVULE ABORTION 5 |
| CRO_T019575 | AT1G19600 (8.00E-15) | pfkB-like carbohydrate kinase family protein |
| CRO_T025017 | - | - |
| CRO_T033465 | AT2G36880 (0) | MAT3|methionine adenosyltransferase 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001833 | regulation of RNA biosynthetic process regulation of fatty acid beta-oxidation regulation of photorespiration AMP biosynthetic process sigma factor activity ER retention sequence binding hydrolase activity, acting on acid anhydrides adenosine kinase activity protein retention in ER lumen protein targeting to chloroplast glyoxylate cycle L-malate dehydrogenase activity ribokinase activity glyoxysome D-ribose metabolic process RNA metabolic process malate metabolic process carbohydrate phosphorylation tricarboxylic acid cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) TCA cycle II (plants and fungi) chloroplast Photosynthesis Carbon metabolism | details |
| TreatCFM001886 | Transcription_related, Transcription factor: G2-like S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis aminoacyl-tRNA ligase activity methionine adenosyltransferase activity ribokinase activity adenosine kinase activity nucleic acid binding AMP biosynthetic process D-ribose metabolic process S-adenosylmethionine biosynthetic process tRNA aminoacylation for protein translation ethylene biosynthesis I (plants) one-carbon metabolic process carbohydrate phosphorylation metal ion binding glycolysis IV (plant cytosol) Aminoacyl-tRNA biosynthesis Biosynthesis of amino acids glycolysis I (from glucose 6-phosphate) single-organism cellular process chloroplast Photosynthesis | details |
| TreatCFM002177 | S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis S-adenosylmethionine biosynthetic process one-carbon metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc glycogen (starch) synthase activity methionine adenosyltransferase activity starch binding cytoplasmic translation ethylene biosynthesis I (plants) starch biosynthesis Transcription_related, Transcription regulator: SNF2 metal ion binding cytosolic large ribosomal subunit Biosynthesis of amino acids | details |
Expression profiles
 Show details about module gene expression profiling |