TreatCFM001833's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| regulation of RNA biosynthetic process | 0.004887091 | GO:2001141 |
| regulation of fatty acid beta-oxidation | 0.004887091 | GO:0031998 |
| regulation of photorespiration | 0.004887091 | GO:0080093 |
| AMP biosynthetic process | 0.005497572 | GO:0006167 |
| sigma factor activity | 0.005642055 | GO:0016987 |
| ER retention sequence binding | 0.005642055 | GO:0046923 |
| hydrolase activity, acting on acid anhydrides | 0.005642055 | GO:0016817 |
| adenosine kinase activity | 0.005642055 | GO:0004001 |
| protein retention in ER lumen | 0.006281546 | GO:0006621 |
| protein targeting to chloroplast | 0.006281546 | GO:0045036 |
| glyoxylate cycle | 0.006281546 | plantCyc |
| L-malate dehydrogenase activity | 0.006768465 | GO:0030060 |
| ribokinase activity | 0.006768465 | GO:0004747 |
| glyoxysome | 0.008096328 | GO:0009514 |
| D-ribose metabolic process | 0.008242702 | GO:0006014 |
| RNA metabolic process | 0.010580095 | GO:0016070 |
| malate metabolic process | 0.013179556 | GO:0006108 |
| carbohydrate phosphorylation | 0.013975219 | GO:0046835 |
| tricarboxylic acid cycle | 0.018896944 | GO:0006099 |
| gluconeogenesis I | 0.021377737 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.021377737 | plantCyc |
| glycolysis IV (plant cytosol) | 0.021377737 | plantCyc |
| TCA cycle II (plants and fungi) | 0.021377737 | plantCyc |
| chloroplast | 0.023432408 | GO:0009507 |
| Photosynthesis | 0.042064661 | KEGG pathway |
| Carbon metabolism | 0.047108101 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002054 | AT2G22780 (2.00E-141) | PMDH1|peroxisomal NAD-malate dehydrogenase 1 |
| CRO_T006985 | AT2G36990 (9.00E-66) | ATSIG6|SIGMA FACTOR 6; SIGF|RNApolymerase sigma-subunit F |
| CRO_T019575 | AT1G19600 (8.00E-15) | pfkB-like carbohydrate kinase family protein |
| CRO_T022114 | AT4G38790 (9.00E-126) | ER lumen protein retaining receptor family protein |
| CRO_T027859 | AT5G20300 (0) | Toc90|translocon at the outer envelope membrane of chloroplasts 90 |
| CRO_T033327 | AT3G05350 (6.00E-140) | Metallopeptidase M24 family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001308 | regulation of fatty acid beta-oxidation regulation of photorespiration protein import into chloroplast thylakoid membrane peptidyl-pyrromethane cofactor linkage tetrapyrrole biosynthetic process glyoxylate cycle chloroplast envelope signal recognition particle, chloroplast targeting glyoxysome chloroplast thylakoid membrane hydroxymethylbilane synthase activity L-ascorbate peroxidase activity L-malate dehydrogenase activity ascorbate glutathione cycle L-ascorbate degradation V tetrapyrrole biosynthesis I (from glutamate) TCA cycle II (plants and fungi) chloroplast thylakoid lumen malate metabolic process chloroplast photosystem II extrinsic component of membrane photosystem II oxygen evolving complex gluconeogenesis I response to light stimulus tricarboxylic acid cycle identical protein binding Ascorbate and aldarate metabolism Porphyrin and chlorophyll metabolism Photosynthesis | details |
| TreatCFM001444 | Transcription_related, Transcription factor: G2-like S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis ribokinase activity methionine adenosyltransferase activity aminoacyl-tRNA ligase activity adenosine kinase activity tRNA aminoacylation for protein translation S-adenosylmethionine biosynthetic process D-ribose metabolic process AMP biosynthetic process ethylene biosynthesis I (plants) one-carbon metabolic process carbohydrate phosphorylation glycolysis IV (plant cytosol) Aminoacyl-tRNA biosynthesis Biosynthesis of amino acids glycolysis I (from glucose 6-phosphate) chloroplast Photosynthesis | details |
| TreatCFM001724 | Cytochrome_P450, Cytochrome P450: CYP97C regulation of photorespiration regulation of fatty acid beta-oxidation zeinoxanthin epsilon hydroxylase activity heme binding L-ascorbate peroxidase activity L-malate dehydrogenase activity oxidation-reduction process glyoxylate cycle carotenoid biosynthetic process ascorbate glutathione cycle L-ascorbate degradation V lutein biosynthesis Transcription_related, Transcription factor: Orphans TCA cycle II (plants and fungi) malate metabolic process Mitophagy - yeast glyoxysome Ascorbate and aldarate metabolism Carotenoid biosynthesis chloroplast thylakoid lumen tricarboxylic acid cycle gluconeogenesis I response to oxidative stress cellular oxidant detoxification chloroplast thylakoid | details |
| TreatCFM001886 | Transcription_related, Transcription factor: G2-like S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis aminoacyl-tRNA ligase activity methionine adenosyltransferase activity ribokinase activity adenosine kinase activity nucleic acid binding AMP biosynthetic process D-ribose metabolic process S-adenosylmethionine biosynthetic process tRNA aminoacylation for protein translation ethylene biosynthesis I (plants) one-carbon metabolic process carbohydrate phosphorylation metal ion binding glycolysis IV (plant cytosol) Aminoacyl-tRNA biosynthesis Biosynthesis of amino acids glycolysis I (from glucose 6-phosphate) single-organism cellular process chloroplast Photosynthesis | details |
| TreatCFM001927 | Transcription_related, Transcription regulator: Rcd1-like protein targeting to chloroplast negative regulation of translation CCR4-NOT core complex hydrolase activity, acting on acid anhydrides cytoplasmic mRNA processing body Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family RNA degradation zinc ion binding | details |
| TreatCFM001986 | L-alanine biosynthesis III molybdenum cofactor biosynthesis tRNA wobble position uridine thiolation chromosome condensation protein targeting to chloroplast Cell cycle - yeast Fanconi anemia pathway sulfurtransferase activity hydrolase activity, acting on acid anhydrides condensed chromosome mitotic nuclear division zinc II ion transmembrane transport | details |
Expression profiles
 Show details about module gene expression profiling |