TreatCFM001469's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Legionellosis | 0.001417832 | KEGG pathway |
| endoplasmic reticulum membrane | 0.007364152 | GO:0005789 |
| cytoplasmic translational termination | 0.008581433 | GO:0002184 |
| plastid translation | 0.012866825 | GO:0032544 |
| ribosomal large subunit binding | 0.018043907 | GO:0043023 |
| intramolecular lyase activity | 0.018043907 | GO:0016872 |
| fatty acid binding | 0.018043907 | GO:0005504 |
| FK506 binding | 0.028539987 | GO:0005528 |
| chaperone-mediated protein folding | 0.031400234 | GO:0061077 |
| ER to Golgi vesicle-mediated transport | 0.033339774 | GO:0006888 |
| protein peptidyl-prolyl isomerization | 0.033339774 | GO:0000413 |
| small GTPase mediated signal transduction | 0.047592075 | GO:0007264 |
| thylakoid lumen | 0.048744968 | GO:0031977 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000853 | AT1G02130 (2.00E-108) | ARA-5|RAS 5; ARA5|ARABIDOPSIS RAS 5; ATRAB1B|RESPONSIVE TO ABSCISIC ACID 1B; ATRABD2A|RAB D2A |
| CRO_T004359 | AT3G63190 (1.00E-74) | AtcpRRF|chloroplast ribosome recycling factor; HFP108|HIGH CHLOROPHYLL FLUORESCENCE AND PALE GREEN MUTANT 108; RRF|ribosome recycling factor, chloroplast precursor |
| CRO_T006286 | AT1G63130 (5.00E-23) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T008452 | AT2G26310 (1.00E-90) | FAP2|fatty-acid-binding protein 2 |
| CRO_T017263 | - | - |
| CRO_T024340 | AT1G23740 (2.00E-16) | AOR|alkenal/one oxidoreductase |
| CRO_T027735 | - | - |
| CRO_T028217 | AT2G44760 (2.00E-155) | Domain of unknown function (DUF3598) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000530 | 2-oxoglutarate decarboxylation to succinyl-CoA 2-oxoisovalerate decarboxylation to isobutanoyl-CoA glycine cleavage pyruvate decarboxylation to acetyl CoA cytoplasmic translational termination positive regulation of RNA polymerase II transcriptional preinitiation complex assembly plastid translation positive regulation of proteasomal protein catabolic process cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex ER-associated ubiquitin-dependent protein catabolic process dihydrolipoyl dehydrogenase activity TBP-class protein binding proteasome-activating ATPase activity ribosomal large subunit binding translational elongation Transcription_related, Transcription factor: bHLH Transcription_related, Transcription factor: C2H2 cell Proteasome translation elongation factor activity cell redox homeostasis | details |
| TreatCFM000531 | cellular carbohydrate metabolic process pentose catabolic process cytoplasmic translational termination positive regulation of RNA polymerase II transcriptional preinitiation complex assembly plastid translation reductive pentose-phosphate cycle pentose-phosphate shunt, non-oxidative branch positive regulation of proteasomal protein catabolic process ER-associated ubiquitin-dependent protein catabolic process ribulose-phosphate 3-epimerase activity proteasome-activating ATPase activity ribosomal large subunit binding TBP-class protein binding pentose phosphate pathway (non-oxidative branch) Calvin-Benson-Bassham cycle Rubisco shunt Transcription_related, Transcription factor: C2H2 cytosolic proteasome complex proteasome regulatory particle, base subcomplex nuclear proteasome complex metal ion binding Proteasome peptidase activity | details |
| TreatCFM000692 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase Legionellosis cytoplasmic translational termination GTP binding plastid translation ribosomal large subunit binding ribosome biogenesis ER to Golgi vesicle-mediated transport small GTPase mediated signal transduction | details |
| TreatCFM000693 | cytoplasmic translational termination plastid translation Transcription_related, Transcription factor: C2H2 ribosome biogenesis ribosomal large subunit binding protein folding | details |
| TreatCFM001544 | coniferin metabolism ceramide metabolic process hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides Golgi apparatus vacuolar proton-transporting V-type ATPase, V1 domain plant-type vacuole hydrogen ion transmembrane transporter activity | details |
| TreatCFM001545 | nucleoside triphosphate biosynthetic process succinate metabolic process succinyl-CoA metabolic process succinate-CoA ligase (ADP-forming) activity cofactor binding succinate-CoA ligase (GDP-forming) activity coniferin metabolism TCA cycle II (plants and fungi) tricarboxylic acid cycle proton-transporting ATP synthase activity, rotational mechanism ATP synthesis coupled proton transport mitochondrial matrix mitochondrial inner membrane | details |
| TreatCFM001636 | photorespiration cytoplasmic translational termination plastid translation pyrimidine nucleoside salvage pyrimidine nucleobase metabolic process uridine kinase activity ribosomal large subunit binding Transcription_related, Transcription factor: C2H2 ribosome biogenesis chloroplast part protein folding Carbon metabolism unfolded protein binding | details |
| TreatCFM001665 | adenosine ribonucleotides de novo biosynthesis fatty acid binding auxin binding proline-tRNA ligase activity auxin receptor activity inositol hexakisphosphate binding regulation of photosynthesis tRNA threonylcarbamoyladenosine modification prolyl-tRNA aminoacylation intramolecular lyase activity plant ovule development positive regulation of RNA polymerase II transcriptional preinitiation complex assembly pollen maturation positive regulation of proteasomal protein catabolic process stamen development proteasome-activating ATPase activity lateral root formation chloroplast stroma mitochondrial proton-transporting ATP synthase complex EKC/KEOPS complex cytosolic proteasome complex nuclear proteasome complex TBP-class protein binding proteasome regulatory particle, base subcomplex SCF ubiquitin ligase complex seed development cobalt ion binding ER-associated ubiquitin-dependent protein catabolic process embryo sac development proton-transporting ATP synthase activity, rotational mechanism ATP synthesis coupled proton transport auxin-activated signaling pathway metalloendopeptidase activity zinc ion binding Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM001705 | cytoplasmic translational termination plastid translation endopeptidase activity adenyl-nucleotide exchange factor activity ribosomal large subunit binding chaperone binding isomerase activity regulation of catalytic activity protein homodimerization activity mitochondrial matrix thylakoid Oxidative phosphorylation copper ion binding | details |
| TreatCFM001744 | pseudouridine degradation polyribonucleotide nucleotidyltransferase activity RNA binding queuine tRNA-ribosyltransferase activity 3'-5'-exoribonuclease activity pseudouridine synthase activity queuosine biosynthetic process pseudouridine synthesis mRNA catabolic process RNA phosphodiester bond hydrolysis, exonucleolytic protein serine/threonine phosphatase activity Purine metabolism RNA processing protein dephosphorylation | details |
| TreatCFM001871 | CA1P biosynthesis cytoplasmic translational termination positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process plastid translation ER-associated ubiquitin-dependent protein catabolic process nuclear proteasome complex proteasome regulatory particle, base subcomplex cytosolic proteasome complex ribosomal large subunit binding proteasome-activating ATPase activity TBP-class protein binding Transcription_related, Transcription factor: bHLH phosphatase activity Proteasome peptidase activity | details |
| TreatCFM001905 | Oxidative phosphorylation plasma membrane respiratory chain complex I mitochondrial electron transport, NADH to ubiquinone aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation mitochondrial respiratory chain complex I 2 iron, 2 sulfur cluster binding proton-transporting ATP synthase activity, rotational mechanism zinc ion binding ATP synthesis coupled proton transport NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane Peroxisome response to oxidative stress | details |
Expression profiles
 Show details about module gene expression profiling |