TreatCFM001488's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.003170698 | ubs family |
| Transcription_related, Transcription factor: TUB | 0.003899268 | TF family |
| cilium | 0.008772705 | GO:0005929 |
| protein localization to cilium | 0.013291978 | GO:0061512 |
| Transcription_related, Transcription factor: ERF | 0.030350829 | TF family |
| phosphatidylinositol binding | 0.04447062 | GO:0035091 |
| aspartic-type endopeptidase activity | 0.046409648 | GO:0004190 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003049 | AT1G08210 (3.00E-26) | Eukaryotic aspartyl protease family protein |
| CRO_T005039 | AT1G43640 (1.00E-168) | AtTLP5|tubby like protein 5 |
| CRO_T011401 | AT5G44210 (3.00E-19) | ATERF-9|ERF DOMAIN PROTEIN- 9; ATERF9|ERF DOMAIN PROTEIN 9 |
| CRO_T012940 | AT1G25375 (3.00E-63) | Metallo-hydrolase/oxidoreductase superfamily protein |
| CRO_T019147 | - | - |
| CRO_T025015 | AT4G33210 (0) | SLOMO|SLOW MOTION |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001432 | saponin biosynthesis III non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 Ribosome biogenesis in eukaryotes | details |
| TreatCFM001459 | pentose phosphate pathway (oxidative branch) I Ubiquitin_Proteasome_system, E3 adaptor: DWD glucose metabolic process pentose-phosphate shunt glucose-6-phosphate dehydrogenase activity Transcription_related, Transcription factor: C2H2 Transcription_related, Transcription factor: ERF | details |
| TreatCFM001487 | Ribosome biogenesis in eukaryotes RNA transport | details |
| TreatCFM001605 | Carbon metabolism nuclear pore central transport channel nucleocytoplasmic transporter activity structural constituent of nuclear pore L-malate dehydrogenase activity glucose-6-phosphate dehydrogenase activity protein targeting to nuclear inner membrane vesicle organization glyoxylate cycle pentose phosphate pathway (oxidative branch) I TCA cycle II (plants and fungi) nuclear pore organization phosphatidylinositol binding malate metabolic process NLS-bearing protein import into nucleus glucose metabolic process pentose-phosphate shunt Endocytosis gluconeogenesis I tricarboxylic acid cycle NADP binding extrinsic component of membrane RNA transport | details |
| TreatCFM001830 | nuclear dicing body nuclear pore central transport channel miRNA binding mRNA cleavage involved in gene silencing by miRNA leaf proximal/distal pattern formation protein targeting to nuclear inner membrane pre-miRNA processing nuclear pore organization production of ta-siRNAs involved in RNA interference intracellular transport primary miRNA processing organelle organization Rab GTPase binding structural constituent of nuclear pore ribonuclease III activity nucleocytoplasmic transporter activity double-stranded RNA binding regulation of vesicle fusion leaf vascular tissue pattern formation activation of GTPase activity Transcription_related, Transcription factor: ERF NLS-bearing protein import into nucleus GTPase activator activity RNA phosphodiester bond hydrolysis, endonucleolytic response to cytokinin single-organism process response to auxin protein transport response to abscisic acid | details |
| TreatCFM002123 | Hippo signaling pathway -fly Ubiquitin mediated proteolysis Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase Transcription_related, Transcription factor: G2-like | details |
Expression profiles
 Show details about module gene expression profiling |