TreatCFM001605's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Carbon metabolism | 0.002836438 | KEGG pathway |
| nuclear pore central transport channel | 0.007819149 | GO:0044613 |
| nucleocytoplasmic transporter activity | 0.009647837 | GO:0005487 |
| structural constituent of nuclear pore | 0.009647837 | GO:0017056 |
| L-malate dehydrogenase activity | 0.009647837 | GO:0030060 |
| glucose-6-phosphate dehydrogenase activity | 0.009647837 | GO:0004345 |
| protein targeting to nuclear inner membrane | 0.011778793 | GO:0036228 |
| vesicle organization | 0.011778793 | GO:0016050 |
| glyoxylate cycle | 0.011802004 | plantCyc |
| pentose phosphate pathway (oxidative branch) I | 0.011802004 | plantCyc |
| TCA cycle II (plants and fungi) | 0.011802004 | plantCyc |
| nuclear pore organization | 0.013738879 | GO:0006999 |
| phosphatidylinositol binding | 0.01413971 | GO:0035091 |
| malate metabolic process | 0.015128504 | GO:0006108 |
| NLS-bearing protein import into nucleus | 0.015128504 | GO:0006607 |
| glucose metabolic process | 0.015128504 | GO:0006006 |
| pentose-phosphate shunt | 0.015128504 | GO:0006098 |
| Endocytosis | 0.017642099 | KEGG pathway |
| gluconeogenesis I | 0.018405243 | plantCyc |
| tricarboxylic acid cycle | 0.02024527 | GO:0006099 |
| NADP binding | 0.024593726 | GO:0050661 |
| extrinsic component of membrane | 0.031228102 | GO:0019898 |
| RNA transport | 0.040243127 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000427 | AT1G24310 (7.00E-134) | unknown protein |
| CRO_T005233 | AT4G28990 (3.00E-16) | RNA-binding protein-related |
| CRO_T012940 | AT1G25375 (3.00E-63) | Metallo-hydrolase/oxidoreductase superfamily protein |
| CRO_T014134 | AT5G07120 (0) | SNX2b|sorting nexin 2B |
| CRO_T019402 | AT5G56720 (2.00E-115) | c-NAD-MDH3|cytosolic-NAD-dependent malate dehydrogenase 3 |
| CRO_T032697 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001459 | pentose phosphate pathway (oxidative branch) I Ubiquitin_Proteasome_system, E3 adaptor: DWD glucose metabolic process pentose-phosphate shunt glucose-6-phosphate dehydrogenase activity Transcription_related, Transcription factor: C2H2 Transcription_related, Transcription factor: ERF | details |
| TreatCFM001487 | Ribosome biogenesis in eukaryotes RNA transport | details |
| TreatCFM001488 | Ubiquitin_Proteasome_system, E3 adaptor: F-box Transcription_related, Transcription factor: TUB cilium protein localization to cilium Transcription_related, Transcription factor: ERF phosphatidylinositol binding aspartic-type endopeptidase activity | details |
| TreatCFM001606 | pyrimidine nucleobases salvage I superpathway of pyrimidine nucleobases salvage superpathway of pyrimidine ribonucleosides salvage nuclear pore central transport channel pentose phosphate pathway (oxidative branch) I pyrimidine ribonucleosides salvage I vesicle organization pyrimidine ribonucleoside biosynthetic process protein targeting to nuclear inner membrane pyrimidine ribonucleotide salvage pyrimidine salvage pathway nuclear pore organization pyrimidine nucleobase metabolic process pyrimidine nucleoside salvage NLS-bearing protein import into nucleus pentose-phosphate shunt glucose metabolic process nucleocytoplasmic transporter activity glucose-6-phosphate dehydrogenase activity structural constituent of nuclear pore uridine kinase activity Endocytosis phosphatidylinositol binding extrinsic component of membrane NADP binding Pyrimidine metabolism | details |
| TreatCFM001830 | nuclear dicing body nuclear pore central transport channel miRNA binding mRNA cleavage involved in gene silencing by miRNA leaf proximal/distal pattern formation protein targeting to nuclear inner membrane pre-miRNA processing nuclear pore organization production of ta-siRNAs involved in RNA interference intracellular transport primary miRNA processing organelle organization Rab GTPase binding structural constituent of nuclear pore ribonuclease III activity nucleocytoplasmic transporter activity double-stranded RNA binding regulation of vesicle fusion leaf vascular tissue pattern formation activation of GTPase activity Transcription_related, Transcription factor: ERF NLS-bearing protein import into nucleus GTPase activator activity RNA phosphodiester bond hydrolysis, endonucleolytic response to cytokinin single-organism process response to auxin protein transport response to abscisic acid | details |
Expression profiles
 Show details about module gene expression profiling |