TreatCFM001495's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.000531915 | cazy family |
| U1 snRNP | 0.001949202 | GO:0005685 |
| Other glycan degradation | 0.002126245 | KEGG pathway |
| snRNA stem-loop binding | 0.00521084 | GO:0035614 |
| alpha-mannosidase activity | 0.00521084 | GO:0004559 |
| phosphoprotein binding | 0.00521084 | GO:0051219 |
| U1 snRNA binding | 0.00521084 | GO:0030619 |
| red or far-red light signaling pathway | 0.005395957 | GO:0010017 |
| mannose metabolic process | 0.005395957 | GO:0006013 |
| protein deglycosylation | 0.005395957 | GO:0006517 |
| mRNA splicing, via spliceosome | 0.022984358 | GO:0000398 |
| response to stress | 0.022984358 | GO:0006950 |
| carbohydrate binding | 0.045070501 | GO:0030246 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T014156 | AT3G26720 (0) | Glycosyl hydrolase family 38 protein |
| CRO_T015313 | AT2G37080 (3.00E-112) | RIP2|ROP interactive partner 2 |
| CRO_T016038 | AT1G44760 (2.00E-22) | Adenine nucleotide alpha hydrolases-like superfamily protein |
| CRO_T022733 | AT5G35180 (3.00E-48) | Protein of unknown function (DUF1336) |
| CRO_T027213 | AT5G59560 (7.00E-74) | SRR1|SENSITIVITY TO RED LIGHT REDUCED 1 |
| CRO_T027823 | AT1G21740 (1.00E-29) | Protein of unknown function (DUF630 and DUF632) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000201 | chromosome DNA catabolic process, endonucleolytic menaquinone biosynthetic process 1,4-dihydroxy-2-naphthoyl-CoA synthase activity chromosome organization 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) starch biosynthesis Cell cycle - yeast Ubiquinone and other terpenoid-quinone biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc glucan endo-1,3-beta-D-glucosidase activity Protein_kinases_phosphatases, PPC:1.9.1: CRPK1 Like Kinase (Types 1 and 2) adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Peroxisome | details |
| TreatCFM000599 | Fatty acid elongation Transcription_related, Transcription factor: GRF Transcription_related, Transcription factor: Orphans developmental process transferase activity, transferring acyl groups other than amino-acyl groups | details |
| TreatCFM001236 | integral component of membrane tau-protein kinase activity Protein_kinases_phosphatases, PPC:1.12.3: Leucine Rich Repeat Kinase VII glucan endo-1,3-beta-D-glucosidase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | details |
| TreatCFM001687 | DNA methylation on cytosine positive gravitropism cell periphery Cellular senescence Cysteine and methionine metabolism methyltransferase activity | details |
Expression profiles
 Show details about module gene expression profiling |