TreatCFM001496's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase | 0.009563862 | kinase family |
| exonuclease activity | 0.012142698 | GO:0004527 |
| RNA degradation | 0.013051924 | KEGG pathway |
| nuclear exosome (RNase complex) | 0.013147787 | GO:0000176 |
| COPII vesicle coat | 0.013147787 | GO:0030127 |
| endonuclease activity | 0.025261798 | GO:0004519 |
| ER to Golgi vesicle-mediated transport | 0.044139963 | GO:0006888 |
| nucleic acid phosphodiester bond hydrolysis | 0.044139963 | GO:0090305 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003748 | AT5G01550 (4.00E-174) | LecRK-VI.3|L-type lectin receptor kinase VI.3; LECRKA4.2|lectin receptor kinase a4.1 |
| CRO_T003923 | AT5G38890 (2.00E-58) | Nucleic acid-binding, OB-fold-like protein |
| CRO_T006036 | AT4G01810 (0) | Sec23/Sec24 protein transport family protein |
| CRO_T008035 | AT4G02450 (2.00E-27) | HSP20-like chaperones superfamily protein |
| CRO_T024749 | AT1G02270 (2.00E-156) | Calcium-binding endonuclease/exonuclease/phosphatase family |
| CRO_T025427 | AT3G14830 (8.00E-179) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001395 | MicroRNAs in cancer L-amino acid transmembrane transporter activity antiporter activity integral component of plasma membrane L-amino acid transport L-alpha-amino acid transmembrane transport hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc amino acid transmembrane transport hydrolase activity, acting on ester bonds | details |
| TreatCFM001788 | metal ion transmembrane transporter activity magnesium ion transmembrane transporter activity COPII vesicle coat ER to Golgi vesicle-mediated transport rRNA processing magnesium ion transport metal ion transport magnesium ion transmembrane transport formation of glycosidic bonds, GlycosylTransferases: GTnc methyltransferase activity | details |
| TreatCFM001821 | mRNA splicing, via spliceosome Spliceosome Transcription_related, Transcription factor: Whirly MicroRNAs in cancer hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc DNA replication factor A complex L-amino acid transport L-alpha-amino acid transmembrane transport Ubiquitin_Proteasome_system, DUB: USP Prp19 complex Cul4-RING E3 ubiquitin ligase complex COPII vesicle coat Proteasome precatalytic spliceosome catalytic step 2 spliceosome defense response to fungus regulation of gene expression RNA secondary structure unwinding ER to Golgi vesicle-mediated transport cellular protein metabolic process positive regulation of transcription, DNA-templated | details |
| TreatCFM001906 | GTPase activator activity Endocytosis rRNA processing positive regulation of GTPase activity methyltransferase activity | details |
Expression profiles
 Show details about module gene expression profiling |