TreatCFM001788's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| metal ion transmembrane transporter activity | 0.005909729 | GO:0046873 |
| magnesium ion transmembrane transporter activity | 0.011808982 | GO:0015095 |
| COPII vesicle coat | 0.017718709 | GO:0030127 |
| ER to Golgi vesicle-mediated transport | 0.031523324 | GO:0006888 |
| rRNA processing | 0.031523324 | GO:0006364 |
| magnesium ion transport | 0.031523324 | GO:0015693 |
| metal ion transport | 0.031523324 | GO:0030001 |
| magnesium ion transmembrane transport | 0.031523324 | GO:1903830 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.042670298 | cazy family |
| methyltransferase activity | 0.047443232 | GO:0008168 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004563 | AT2G47620 (8.00E-83) | ATSWI3A|SWITCH/sucrose nonfermenting 3A |
| CRO_T006036 | AT4G01810 (0) | Sec23/Sec24 protein transport family protein |
| CRO_T010649 | AT1G19290 (6.00E-49) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T014075 | AT5G10620 (1.00E-59) | methyltransferases |
| CRO_T024292 | AT1G16010 (2.00E-105) | MGT2|magnesium transporter 2 |
| CRO_T031190 | AT1G16010 (1.00E-86) | MGT2|magnesium transporter 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001496 | Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase exonuclease activity RNA degradation nuclear exosome (RNase complex) COPII vesicle coat endonuclease activity ER to Golgi vesicle-mediated transport nucleic acid phosphodiester bond hydrolysis | details |
| TreatCFM001821 | mRNA splicing, via spliceosome Spliceosome Transcription_related, Transcription factor: Whirly MicroRNAs in cancer hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc DNA replication factor A complex L-amino acid transport L-alpha-amino acid transmembrane transport Ubiquitin_Proteasome_system, DUB: USP Prp19 complex Cul4-RING E3 ubiquitin ligase complex COPII vesicle coat Proteasome precatalytic spliceosome catalytic step 2 spliceosome defense response to fungus regulation of gene expression RNA secondary structure unwinding ER to Golgi vesicle-mediated transport cellular protein metabolic process positive regulation of transcription, DNA-templated | details |
| TreatCFM001883 | allantoin degradation to ureidoglycolate II (ammonia producing) tetrapyrrole biosynthesis I (from glutamate) GTP binding hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines metal ion transmembrane transporter activity protein tyrosine phosphatase activity structural constituent of cytoskeleton cellular nitrogen compound catabolic process Phagosome organic substance metabolic process microtubule-based process peptidyl-tyrosine dephosphorylation unfolded protein binding primary metabolic process metal ion transport response to stress | details |
| TreatCFM001906 | GTPase activator activity Endocytosis rRNA processing positive regulation of GTPase activity methyltransferase activity | details |
| TreatCFM002085 | L-arginine biosynthesis II (acetyl cycle) L-ornithine biosynthesis I tetrapyrrole biosynthesis I (from glutamate) Transcription_related, Transcription regulator: GNAT acetyl-CoA:L-glutamate N-acetyltransferase activity metal ion transmembrane transporter activity ATP-dependent helicase activity 2-Oxocarboxylic acid metabolism arginine biosynthetic process DNA recombination metal ion transport unfolded protein binding response to stress | details |
Expression profiles
 Show details about module gene expression profiling |