TreatCFM001588's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-leucine biosynthesis | 0.001772133 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.003899268 | cazy family |
| Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 | 0.003899268 | kinase family |
| organonitrogen compound biosynthetic process | 0.007709663 | GO:1901566 |
| organic acid biosynthetic process | 0.007709663 | GO:0016053 |
| water transport | 0.015401108 | GO:0006833 |
| cellular water homeostasis | 0.015401108 | GO:0009992 |
| glycerol transport | 0.015401108 | GO:0015793 |
| ion transmembrane transport | 0.02179568 | GO:0034220 |
| 2-Oxocarboxylic acid metabolism | 0.022276143 | KEGG pathway |
| oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 0.024055343 | GO:0016616 |
| large ribosomal subunit rRNA binding | 0.024055343 | GO:0070180 |
| glycerol channel activity | 0.024055343 | GO:0015254 |
| water channel activity | 0.024055343 | GO:0015250 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003801 | AT1G31180 (2.00E-149) | ATIMD3|ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 3; IMD3|isopropylmalate dehydrogenase 3; IPMDH1|ISOPROPYLMALATE DEHYDROGENASE 1 |
| CRO_T007403 | AT1G04480 (8.00E-72) | Ribosomal protein L14p/L23e family protein |
| CRO_T009462 | AT4G22130 (0) | SRF8|STRUBBELIG-receptor family 8 |
| CRO_T017224 | AT3G16240 (3.00E-20) | DELTA-TIP|delta tonoplast integral protein |
| CRO_T019884 | AT4G28010 (6.00E-28) | RPF5|RNA processing factor 5 |
| CRO_T031330 | AT1G63130 (5.00E-44) | Tetratricopeptide repeat (TPR)-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000270 | CMP-3-deoxy-D-manno-octulosonate biosynthesis 3-deoxy-8-phosphooctulonate synthase activity voltage-gated potassium channel activity Lipopolysaccharide biosynthesis clathrin adaptor complex GTPase activator activity cellular response to DNA damage stimulus potassium ion transport regulation of membrane potential Fanconi anemia pathway Lysosome protein transporter activity biosynthetic process ion transmembrane transport positive regulation of GTPase activity DNA metabolic process cytoplasm Plant-pathogen interaction Endocytosis vesicle-mediated transport formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001675 | histone H4 acetylation histone H2A acetylation Protein_kinases_phosphatases, PPC:1.8.1: Leucine Rich Repeat Kinase I NuA4 histone acetyltransferase complex negative regulation of transcription, DNA-templated chromatin remodeling activation of MAPKK activity MAPK cascade MAP kinase kinase kinase activity large ribosomal subunit rRNA binding DNA repair | details |
| TreatCFM001710 | Endocytosis positive regulation of GTPase activity GTP:GDP antiporter activity regulation of vesicle targeting, to, from or within Golgi endosome transport via multivesicular body sorting pathway root hair cell differentiation cell adhesion longitudinal axis specification establishment of planar polarity basipetal auxin transport regulation of ARF protein signal transduction cellular response to DNA damage stimulus ARF guanyl-nucleotide exchange factor activity Fanconi anemia pathway Lysosome endosome membrane lateral root formation cytokinesis by cell plate formation clathrin adaptor complex phloem or xylem histogenesis unidimensional cell growth GTPase activator activity DNA metabolic process protein transporter activity protein homodimerization activity protein transport formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001884 | water channel activity glycerol channel activity cellular water homeostasis water transport glycerol transport ion transmembrane transport | details |
| TreatCFM002101 | CMP-3-deoxy-D-manno-octulosonate biosynthesis RNA degradation Lipopolysaccharide biosynthesis fruit development organ morphogenesis reactive oxygen species metabolic process endoplasmic reticulum unfolded protein response lateral root development regulation of root development response to extracellular stimulus defense response to fungus, incompatible interaction 3-deoxy-8-phosphooctulonate synthase activity Autophagy - animal Ras signaling pathway Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 ATG1/ULK1 kinase complex heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway autophagy histone acetylation ATP binding large ribosomal subunit rRNA binding Cul4-RING E3 ubiquitin ligase complex histone acetyltransferase activity Transcription_related, Transcription regulator: mTERF jasmonic acid mediated signaling pathway response to ethylene poly(A) RNA binding biosynthetic process RNA processing | details |
Expression profiles
 Show details about module gene expression profiling |