TreatCFM001600's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein O-linked glycosylation via hydroxyproline | 0.005140079 | GO:0018258 |
| arabinogalactan protein metabolic process | 0.005140079 | GO:0010405 |
| Valine, leucine and isoleucine degradation | 0.006378264 | KEGG pathway |
| acireductone dioxygenase [iron(II)-requiring] activity | 0.007709321 | GO:0010309 |
| galactosylxylosylprotein 3-beta-galactosyltransferase activity | 0.007709321 | GO:0047220 |
| S-methyl-5-thio-α-D-ribose 1-phosphate degradation | 0.008844054 | plantCyc |
| L-valine degradation I | 0.008844054 | plantCyc |
| Cysteine and methionine metabolism | 0.014831917 | KEGG pathway |
| L-methionine biosynthetic process from methylthioadenosine | 0.017119425 | GO:0019509 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.028257112 | cazy family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002636 | - | - |
| CRO_T013836 | AT1G27120 (0) | Galactosyltransferase family protein |
| CRO_T015432 | - | - |
| CRO_T020771 | - | - |
| CRO_T021450 | AT5G49690 (1.00E-154) | UDP-Glycosyltransferase superfamily protein |
| CRO_T025402 | AT4G14716 (6.00E-69) | ARD1|acireductone dioxygenase 1; SGB3|suppressor of G Beta 3 |
| CRO_T029178 | AT2G04340 (1.00E-56) | unknown protein |
| CRO_T033242 | AT4G20930 (2.00E-49) | 6-phosphogluconate dehydrogenase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001468 | Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) L-glutamine degradation I L-histidine biosynthesis ligase activity 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity oxo-acid-lyase activity galactosylxylosylprotein 3-beta-galactosyltransferase activity imidazoleglycerol-phosphate synthase activity protein O-linked glycosylation via hydroxyproline arabinogalactan protein metabolic process Transcription_related, Transcription factor: MIKC formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001623 | acireductone dioxygenase [iron(II)-requiring] activity S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-valine degradation I Valine, leucine and isoleucine degradation Transcription_related, Transcription factor: B3 O-acyltransferase activity Cysteine and methionine metabolism Glycerolipid metabolism L-methionine biosynthetic process from methylthioadenosine | details |
| TreatCFM001819 | Valine, leucine and isoleucine degradation L-valine degradation I Transcription_related, Transcription factor: TCP single-organism metabolic process intracellular | details |
| TreatCFM002116 | phosphatidylethanolamine biosynthesis I phosphatidylserine decarboxylase activity Valine, leucine and isoleucine degradation L-valine degradation I Glycerophospholipid metabolism anion transport phospholipid biosynthetic process transmembrane transporter activity aspartic-type endopeptidase activity protein catabolic process single-organism metabolic process | details |
| TreatCFM002117 | Hedgehog signaling pathway Valine, leucine and isoleucine degradation L-valine degradation I Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box Ubiquitin_Proteasome_system, E3 adaptor: BTB cellular developmental process endoplasmic reticulum membrane aspartic-type endopeptidase activity peptidyl-prolyl cis-trans isomerase activity FK506 binding embryo development root development organic substance metabolic process chaperone-mediated protein folding post-embryonic development primary metabolic process protein catabolic process cellular metabolic process single-organism metabolic process lipid metabolic process | details |
Expression profiles
 Show details about module gene expression profiling |