TreatCFM002116's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phosphatidylethanolamine biosynthesis I | 0.003102103 | plantCyc |
| phosphatidylserine decarboxylase activity | 0.005171089 | GO:0004609 |
| Valine, leucine and isoleucine degradation | 0.005581806 | KEGG pathway |
| L-valine degradation I | 0.007741519 | plantCyc |
| Glycerophospholipid metabolism | 0.01729342 | KEGG pathway |
| anion transport | 0.020633518 | GO:0006820 |
| phospholipid biosynthetic process | 0.020633518 | GO:0008654 |
| transmembrane transporter activity | 0.026329453 | GO:0022857 |
| aspartic-type endopeptidase activity | 0.026329453 | GO:0004190 |
| protein catabolic process | 0.046162577 | GO:0030163 |
| single-organism metabolic process | 0.047662945 | GO:0044710 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000851 | AT4G17550 (0) | AtG3Pp4|glycerol-3-phosphate permease 4 |
| CRO_T002636 | - | - |
| CRO_T011249 | AT1G11910 (2.00E-76) | APA1|aspartic proteinase A1 |
| CRO_T012189 | AT4G16700 (1.00E-89) | PSD1|phosphatidylserine decarboxylase 1 |
| CRO_T022120 | AT5G19855 (5.00E-54) | RbcX2|homologue of cyanobacterial RbcX 2 |
| CRO_T030721 | - | - |
| CRO_T033242 | AT4G20930 (2.00E-49) | 6-phosphogluconate dehydrogenase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001040 | oleate biosynthesis I (plants) medium-chain fatty acid-CoA ligase activity mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity MIS complex nuclear speck acyl-[acyl-carrier-protein] desaturase activity long-chain fatty acid-CoA ligase activity Phenylalanine metabolism long-chain fatty acid metabolic process fatty-acyl-CoA biosynthetic process sporopollenin biosynthetic process mRNA methylation substrate-specific transmembrane transporter activity Fatty acid metabolism cutin biosynthesis long-chain fatty acid activation palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis chloroplast | details |
| TreatCFM001540 | ascorbate glutathione cycle lipoate synthase activity glutathione dehydrogenase (ascorbate) activity Ascorbate and aldarate metabolism Proteasome protein glutathionylation protein lipoylation fatty acid beta-oxidation using acyl-CoA dehydrogenase lipid homeostasis shoot system development lipoate biosynthetic process acyl-CoA dehydrogenase activity oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor fatty-acyl-CoA binding threonine-type endopeptidase activity | details |
| TreatCFM001600 | protein O-linked glycosylation via hydroxyproline arabinogalactan protein metabolic process Valine, leucine and isoleucine degradation acireductone dioxygenase [iron(II)-requiring] activity galactosylxylosylprotein 3-beta-galactosyltransferase activity S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-valine degradation I Cysteine and methionine metabolism L-methionine biosynthetic process from methylthioadenosine formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001623 | acireductone dioxygenase [iron(II)-requiring] activity S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-valine degradation I Valine, leucine and isoleucine degradation Transcription_related, Transcription factor: B3 O-acyltransferase activity Cysteine and methionine metabolism Glycerolipid metabolism L-methionine biosynthetic process from methylthioadenosine | details |
| TreatCFM001819 | Valine, leucine and isoleucine degradation L-valine degradation I Transcription_related, Transcription factor: TCP single-organism metabolic process intracellular | details |
| TreatCFM002087 | chlorophyll a degradation II hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: G2-like Necroptosis Porphyrin and chlorophyll metabolism pheophorbide a oxygenase activity alpha-amylase activity chlorophyllide a oxygenase [overall] activity chloroplast thylakoid chloroplast defense response to bacterium, incompatible interaction fruit development cell death chlorophyll catabolic process cellular response to oxidative stress glycerol ether metabolic process flower development sulfate assimilation peptidyl-prolyl cis-trans isomerase activity aspartic-type endopeptidase activity 2 iron, 2 sulfur cluster binding oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor protein disulfide oxidoreductase activity protein catabolic process | details |
| TreatCFM002117 | Hedgehog signaling pathway Valine, leucine and isoleucine degradation L-valine degradation I Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box Ubiquitin_Proteasome_system, E3 adaptor: BTB cellular developmental process endoplasmic reticulum membrane aspartic-type endopeptidase activity peptidyl-prolyl cis-trans isomerase activity FK506 binding embryo development root development organic substance metabolic process chaperone-mediated protein folding post-embryonic development primary metabolic process protein catabolic process cellular metabolic process single-organism metabolic process lipid metabolic process | details |
| TreatCFM002155 | Cytochrome_P450, Cytochrome P450: CYP73A Degradation of aromatic compounds trans-cinnamate 4-monooxygenase activity phenylpropanoid biosynthesis, initial reactions phenylalanine ammonia-lyase activity lignin metabolic process protein N-glycosylation (eukaryotic, high mannose) anion transport suberin monomers biosynthesis transmembrane transporter activity cysteine-type endopeptidase activity extracellular space Lysosome integral component of membrane vacuolar membrane | details |
Expression profiles
 Show details about module gene expression profiling |