TreatCFM001616's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-cysteine biosynthesis I | 0.002303262 | plantCyc |
| Transcription_related, Transcription factor: NF-YC | 0.002480253 | TF family |
| glutamine-fructose-6-phosphate transaminase (isomerizing) activity | 0.009654255 | GO:0004360 |
| chromoplast | 0.010115924 | GO:0009509 |
| Arp2/3 protein complex | 0.010115924 | GO:0005885 |
| UDP-N-acetylglucosamine metabolic process | 0.011254147 | GO:0006047 |
| fructose 6-phosphate metabolic process | 0.011254147 | GO:0006002 |
| cysteine biosynthetic process from serine | 0.011254147 | GO:0006535 |
| Arp2/3 complex-mediated actin nucleation | 0.011254147 | GO:0034314 |
| cysteine synthase activity | 0.016082105 | GO:0004124 |
| cellular amino acid biosynthetic process | 0.017346871 | GO:0008652 |
| Antigen processing and presentation | 0.028225865 | KEGG pathway |
| isomerase activity | 0.038522977 | GO:0016853 |
| Endocytosis | 0.048410715 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000985 | AT5G62230 (2.00E-47) | ERL1|ERECTA-like 1 |
| CRO_T002308 | AT2G43750 (4.00E-158) | ACS1|ARABIDOPSIS CYSTEINE SYNTHASE 1; ATCS-B|CYSTEIN SYNTHASE-B; CPACS1|CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1; OASB|O-acetylserine (thiol) lyase B |
| CRO_T003019 | AT5G52190 (8.00E-70) | Sugar isomerase (SIS) family protein |
| CRO_T005453 | AT4G01710 (1.00E-62) | CRK|CROOKED |
| CRO_T007272 | AT1G08970 (7.00E-65) | HAP5C|HEME ACTIVATED PROTEIN 5C; NF-YC9|nuclear factor Y, subunit C9 |
| CRO_T020546 | AT3G59070 (5.00E-55) | Cytochrome b561/ferric reductase transmembrane with DOMON related domain |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000979 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc integral component of membrane 4-alpha-glucanotransferase activity heteropolysaccharide binding dipeptidyl-peptidase activity Renin-angiotensin system starch binding glycogen metabolic process maltose catabolic process sucrose biosynthesis II protein phosphorylation triacylglycerol degradation plasma membrane Lysosome Glycerolipid metabolism serine-type carboxypeptidase activity regulation of cellular process Starch and sucrose metabolism Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | details |
| TreatCFM001338 | Protein_kinases_phosphatases, PPC:1.15.1: Receptor Like Cytoplasmic Kinase I Arp2/3 protein complex Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Arp2/3 complex-mediated actin nucleation toxin catabolic process Glutathione metabolism Endocytosis glutathione metabolic process | details |
| TreatCFM001820 | aerobic respiration I (cytochrome c) Transcription_related, Transcription factor: NF-YC Oxidative phosphorylation fructose 6-phosphate metabolic process UDP-N-acetylglucosamine metabolic process oxidation-reduction process Antigen processing and presentation aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation glutamine-fructose-6-phosphate transaminase (isomerizing) activity ubiquinol-cytochrome-c reductase activity hydrogen ion transmembrane transport FMN binding 2 iron, 2 sulfur cluster binding isomerase activity | details |
| TreatCFM001957 | Arp2/3 protein complex dhurrin biosynthesis Arp2/3 complex-mediated actin nucleation cutin biosynthesis Endocytosis Cytochrome_P450, Cytochrome P450: CYP71B Transcription_related, Transcription factor: WRKY Transcription_related, Transcription factor: C2H2 NAD+ ADP-ribosyltransferase activity oxidation-reduction process | details |
| TreatCFM001996 | UDP-L-arabinose biosynthesis I (from UDP-xylose) UDP-sugars interconversion Phagosome aerobic respiration I (cytochrome c) galactose metabolic process microtubule-based process ubiquinol-cytochrome-c reductase activity UDP-glucose 4-epimerase activity structural constituent of cytoskeleton 2 iron, 2 sulfur cluster binding hydrogen ion transmembrane transport Amino sugar and nucleotide sugar metabolism | details |
Expression profiles
 Show details about module gene expression profiling |